Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00008 ATGGACGAGTTAATTGCAACCAGATATTGGTGTCACATGTGTTCTCAAATGGTGAATCCCATCGTTGACGTGGAAATTAAATGCCCCTTCTGCCGCAGCGGCTTTGTTGAGGAGATAGGAAACGGTATTTCCAGCGACAATAACGATAACAACAACAATAACAATAATAACAATGAGCTCGAATCCGATTTTGGGTCGGAGCGAGCTTTGTCTCTCTGGGCTCCGATCTTGCTGGGTATGATGGGAAATCCCCGTGGGCGACGAAGATTCAGACATCTAGAGTTTGACGACGACGATGATGATAATGAGCATGAGGATGGAGAGGGGAATCATGTGAGTAGTGAGACGACTGAGCTTGATTCAGTCATTAGGAGGAGGAGAAGTTCAGCTACCATTCTTCAGTTGCTCCAAGGTATCAGGGCTGGAATCGCAACTGCTGAATCAGAGAATAGTTATGAGGGAGAGAGGAGCAGAGAAAGAGAGAGGGTTATTCTTATAAATCCTTTCAATCAGACCATTGTAGTTCAAGGAGGTGAGAATCAAAATCAAAACCATAACTCCATTGGGTCGCTGGGTGATTATTTCGTAGGACCTGGTTTGGATTTGTTATTGCAACATATAGCCGAGAATGATCCCAACAGATATGGCACTCCACCAGCACAGAAGGAGGCAGTTGATGCGCTGCCCACCGTGAGGGTTGAACTTGAGGAGGATAGCCGTTTGCAATGTTCAGTGTGTTTGGATGAGTTTGAGGTGGATGAAGAAGCCAAAGAGATGCCATGTAAGCATAAATTTCATACAGGTTGTATCCTGCCATGGCTGGAGCTGCATAGTTCTTGCCCAGTTTGTAGGCATCAATTGCCTGGGGATGAATCCAAGCGTGATGTAGATGGTGGGTCTGCTGCCAGGTTCATGAGCGACCTCAATAATGGTAATGGTAATGGTAATGGCAATGGCAGCGGGGAGATTGAGGAGAGAAATTCATCCGAGTCTGGGAGGAGGTTTTCGTTTCCATGGCCTTTTAATGGCTTGTTTACTTCCCAAGGAAACTCCTCGGCTGGAAGTGCGAGTGATTCTCAAAGGGATCACACTTCCATTTGA 1101 46.23 MDELIATRYWCHMCSQMVNPIVDVEIKCPFCRSGFVEEIGNGISSDNNDNNNNNNNNNELESDFGSERALSLWAPILLGMMGNPRGRRRFRHLEFDDDDDDNEHEDGEGNHVSSETTELDSVIRRRRSSATILQLLQGIRAGIATAESENSYEGERSRERERVILINPFNQTIVVQGGENQNQNHNSIGSLGDYFVGPGLDLLLQHIAENDPNRYGTPPAQKEAVDALPTVRVELEEDSRLQCSVCLDEFEVDEEAKEMPCKHKFHTGCILPWLELHSSCPVCRHQLPGDESKRDVDGGSAARFMSDLNNGNGNGNGNGSGEIEERNSSESGRRFSFPWPFNGLFTSQGNSSAGSASDSQRDHTSI 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72377 74152 + MELO3C014733.2.1 Cme05g00008 327071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00008 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 290 IPR013083 -
Cme05g00008 366 MobiDBLite consensus disorder prediction 106 121 - -
Cme05g00008 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 345 - -
Cme05g00008 366 MobiDBLite consensus disorder prediction 341 366 - -
Cme05g00008 366 SUPERFAMILY RING/U-box 232 288 - -
Cme05g00008 366 MobiDBLite consensus disorder prediction 305 325 - -
Cme05g00008 366 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 345 - -
Cme05g00008 366 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Cme05g00008 366 MobiDBLite consensus disorder prediction 42 62 - -
Cme05g00008 366 MobiDBLite consensus disorder prediction 289 366 - -
Cme05g00008 366 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Cme05g00008 366 MobiDBLite consensus disorder prediction 96 121 - -
Cme05g00008 366 Pfam Ring finger domain 242 284 IPR001841 -
Cme05g00008 366 CDD RING-H2_RNF181 242 287 - -
Cme05g00008 366 SMART ring_2 243 283 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00008 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101216515 634.024
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g00390 Cme05g00008 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01963 Cme-Chr2:25888628 Cme05g00008 Cme-Chr5:72377 3.57E-14 dispersed
Cme05g00008 Cme-Chr5:72377 Cme12g01797 Cme-Chr12:24472027 1.03E-47 dispersed
Cme05g01848 Cme-Chr5:27283306 Cme05g00008 Cme-Chr5:72377 5.74E-11 dispersed
Cme05g02002 Cme-Chr5:28543348 Cme05g00008 Cme-Chr5:72377 1.53E-13 dispersed
Cme12g01799 Cme-Chr12:24481845 Cme05g00008 Cme-Chr5:72377 4.72E-19 dispersed
Cme05g00008 Cme-Chr5:72377 Cme11g01324 Cme-Chr11:20118849 1.22E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
Vvi6g944 . . . . . . . . . Cmo11g00801 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0656 Lsi06g00416 . . Cme05g00008 . . . . . . . . . . . Cma11g00794 . . . . Cpe04g00970 . . . . . . . Cla03g01377 Cam03g1457 Cec03g1494 Cco03g1483 Clacu03g1479 Cmu03g2038 Cre03g1709 . . . Cme02g00390
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00008 Cme_Chr05 FPKM 20.043993 18.365501 10.802239 11.313116 23.010624 19.079277 20.786951 15.5964 20.738913 18.972385