Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00031 ATGCCGACGAGTTTCAGGCCTGAGCTTCTCACCATCACCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTACGTCGCCAAGAAATCCAAATCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCACAATGTAGCAAAGTTCAGATTCTCTCTTCCGACTCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGCTGCAGACGATTGATTGATGTGTTGTTGTACAGAGGAAAAGATAGCCAAGGTGAAGATGTTGTGAAACCTTACACCCCAACCACTTTGGACACAGATGTTGGATACTTTGAGTTGGTCATTAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGAACCTAATGAAGTAGAGGCCTTTGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATCCAGTGGATCGCACCAACGTGCATCTTATCTATGCTAATGTTACTTATGAAGACATTCTTCTGAAGGAAGAATTGGATAGTCTTGCAACTACGTTCCCTACCCGTTTTTCTATCTACTATGTCCTCAATCAGCCTCCAGAAGAATGGGATGGTGGTGTTGGCTTTGTAACTGAGGAAATGATACGGCTGCACTGTCCTGCGCCATCCCCTAATGTCCGGATTTTGAGGTGCGGACCACCACCCATGAACAAAGCTATGGCAGCTTACCTCAACACTATTGGCTACACTTCCCAAATGCAGTTTCAGTTCTAA 864 46.06 MPTSFRPELLTITVAVVAVGVATAYYFYVAKKSKSKGCLDPDNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRRLIDVLLYRGKDSQGEDVVKPYTPTTLDTDVGYFELVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGITPMFQVARAILENPVDRTNVHLIYANVTYEDILLKEELDSLATTFPTRFSIYYVLNQPPEEWDGGVGFVTEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGYTSQMQFQF 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 243873 247183 + MELO3C014713.2.1 Cme05g00031 327094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00031 287 Pfam Oxidoreductase FAD-binding domain 47 154 IPR008333 -
Cme05g00031 287 Gene3D Translation factors 37 144 - -
Cme05g00031 287 PRINTS Cytochrome B5 reductase signature 201 212 - -
Cme05g00031 287 PRINTS Cytochrome B5 reductase signature 140 154 - -
Cme05g00031 287 PRINTS Cytochrome B5 reductase signature 163 182 - -
Cme05g00031 287 PRINTS Cytochrome B5 reductase signature 73 84 - -
Cme05g00031 287 PRINTS Cytochrome B5 reductase signature 257 265 - -
Cme05g00031 287 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 155 IPR017927 GO:0016491
Cme05g00031 287 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 163 182 IPR001709 GO:0016491
Cme05g00031 287 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 257 265 IPR001709 GO:0016491
Cme05g00031 287 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 201 212 IPR001709 GO:0016491
Cme05g00031 287 PANTHER NADH-CYTOCHROME B5 REDUCTASE 4 287 IPR001834 GO:0016491
Cme05g00031 287 Pfam Oxidoreductase NAD-binding domain 164 270 IPR001433 GO:0016491
Cme05g00031 287 SUPERFAMILY Riboflavin synthase domain-like 39 157 IPR017938 -
Cme05g00031 287 Gene3D - 145 287 IPR039261 -
Cme05g00031 287 PANTHER NADH-CYTOCHROME B5 REDUCTASE 4 287 - -
Cme05g00031 287 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 143 281 IPR039261 -
Cme05g00031 287 CDD cyt_b5_reduct_like 47 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00031 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 533.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00031 Cme-Chr5:243873 Cme08g01481 Cme-Chr8:13612767 1.48E-145 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00031 Cme_Chr05 FPKM 0.58659 0.743971 1.852599 1.446596 5.042845 5.673817 5.004303 5.188629 5.611989 4.303276