Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00041 ATGGCCGTAACAGCCCCAGGGCAGCTCAACGTGAACGAATCTCCTTCTTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCTAGAGAATTGAAAACAGGGGAAATTGTTGCCCTGAAGAAAATAAGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCAATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAACAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGCCTGGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGACATAAAAGGGTCAAATCTGCTTATTGACAACGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCATAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGGCCTCCTGAACTGCTGCTTGGGTCGACCAAATACGGGCCAGCTGTAGATATGTGGTCTGTTGGCTGTATCTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAACAATTAAATAAGATTTTTGAGCTGTGTGGTGCTCCGGATGAAGTAAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAATAATTTCAAACCCACGAGGCCAATGAAGAGACGTATTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTACACTTGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCAGAGTATTTTTGGACAGATCCATTACCTTGTGATCCTAAAAGTTTGCCCAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGACAAGCACACGCACAAATGCGACCAGTACCTAACCAACCTATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTCGGAAAGCCTCGTGGACCTCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGGTGCACCCTATGGGTCTGGTAGCATGTCTGGTGCTGGTCCTCGGGGAGGAGCTGGTGGTGGTGGTGGTTATGGCGTGGGGGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGTACTGGTCGTGGCTCTAATGTGATGGGCGGAAACCGCAACCAACAATATGGATGGCAACAATAG 1545 46.02 MAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGQGGYGNTQYAQGRGGAPYGSGSMSGAGPRGGAGGGGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQ 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 296340 302025 + MELO3C014702.2.1 Cme05g00041 327104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00041 514 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00041 514 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cme05g00041 514 PANTHER CELL DIVISION PROTEIN KINASE 5 449 - -
Cme05g00041 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cme05g00041 514 MobiDBLite consensus disorder prediction 486 514 - -
Cme05g00041 514 MobiDBLite consensus disorder prediction 335 514 - -
Cme05g00041 514 MobiDBLite consensus disorder prediction 428 446 - -
Cme05g00041 514 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 449 - -
Cme05g00041 514 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Cme05g00041 514 CDD STKc_CDK9_like 25 324 - -
Cme05g00041 514 MobiDBLite consensus disorder prediction 337 366 - -
Cme05g00041 514 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Cme05g00041 514 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00041 514 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00041 514 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Cme05g00041 514 MobiDBLite consensus disorder prediction 373 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02180 Cme-Chr3:28832662 Cme05g00041 Cme-Chr5:296340 6.75E-96 dispersed
Cme04g01874 Cme-Chr4:26453632 Cme05g00041 Cme-Chr5:296340 0 dispersed
Cme05g00041 Cme-Chr5:296340 Cme06g01197 Cme-Chr6:9416222 7.61E-121 dispersed
Cme10g00140 Cme-Chr10:1009312 Cme05g00041 Cme-Chr5:296340 1.17E-87 dispersed
Cme05g00041 Cme-Chr5:296340 Cme02g00153 Cme-Chr2:1140221 7.19E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64868 PF00069 Pkinase 4.10E-75 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00041 K08819 - csv:101220936 996.112