Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g00041 | ATGGCCGTAACAGCCCCAGGGCAGCTCAACGTGAACGAATCTCCTTCTTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCTAGAGAATTGAAAACAGGGGAAATTGTTGCCCTGAAGAAAATAAGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCAATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAACAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGCCTGGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGACATAAAAGGGTCAAATCTGCTTATTGACAACGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCATAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGGCCTCCTGAACTGCTGCTTGGGTCGACCAAATACGGGCCAGCTGTAGATATGTGGTCTGTTGGCTGTATCTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAACAATTAAATAAGATTTTTGAGCTGTGTGGTGCTCCGGATGAAGTAAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAATAATTTCAAACCCACGAGGCCAATGAAGAGACGTATTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTACACTTGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCAGAGTATTTTTGGACAGATCCATTACCTTGTGATCCTAAAAGTTTGCCCAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGACAAGCACACGCACAAATGCGACCAGTACCTAACCAACCTATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTCGGAAAGCCTCGTGGACCTCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGGTGCACCCTATGGGTCTGGTAGCATGTCTGGTGCTGGTCCTCGGGGAGGAGCTGGTGGTGGTGGTGGTTATGGCGTGGGGGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGTACTGGTCGTGGCTCTAATGTGATGGGCGGAAACCGCAACCAACAATATGGATGGCAACAATAG | 1545 | 46.02 | MAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGQGGYGNTQYAQGRGGAPYGSGSMSGAGPRGGAGGGGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQ | 514 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 296340 | 302025 | + | MELO3C014702.2.1 | Cme05g00041 | 327104 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g00041 | 514 | SMART | serkin_6 | 25 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g00041 | 514 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524 | |
Cme05g00041 | 514 | PANTHER | CELL DIVISION PROTEIN KINASE | 5 | 449 | - | - | |
Cme05g00041 | 514 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g00041 | 514 | MobiDBLite | consensus disorder prediction | 486 | 514 | - | - | |
Cme05g00041 | 514 | MobiDBLite | consensus disorder prediction | 335 | 514 | - | - | |
Cme05g00041 | 514 | MobiDBLite | consensus disorder prediction | 428 | 446 | - | - | |
Cme05g00041 | 514 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 5 | 449 | - | - | |
Cme05g00041 | 514 | Gene3D | Transferase(Phosphotransferase) domain 1 | 122 | 364 | - | - | |
Cme05g00041 | 514 | CDD | STKc_CDK9_like | 25 | 324 | - | - | |
Cme05g00041 | 514 | MobiDBLite | consensus disorder prediction | 337 | 366 | - | - | |
Cme05g00041 | 514 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 332 | IPR011009 | - | |
Cme05g00041 | 514 | Pfam | Protein kinase domain | 25 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g00041 | 514 | ProSiteProfiles | Protein kinase domain profile. | 25 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g00041 | 514 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 121 | - | - | |
Cme05g00041 | 514 | MobiDBLite | consensus disorder prediction | 373 | 400 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g02180 | Cme-Chr3:28832662 | Cme05g00041 | Cme-Chr5:296340 | 6.75E-96 | dispersed | |
Cme04g01874 | Cme-Chr4:26453632 | Cme05g00041 | Cme-Chr5:296340 | 0 | dispersed | |
Cme05g00041 | Cme-Chr5:296340 | Cme06g01197 | Cme-Chr6:9416222 | 7.61E-121 | dispersed | |
Cme10g00140 | Cme-Chr10:1009312 | Cme05g00041 | Cme-Chr5:296340 | 1.17E-87 | dispersed | |
Cme05g00041 | Cme-Chr5:296340 | Cme02g00153 | Cme-Chr2:1140221 | 7.19E-117 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64868 | PF00069 | Pkinase | 4.10E-75 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g00041 | K08819 | - | csv:101220936 | 996.112 |