Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00043 ATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGCCTTGTTGGAAAATATGAAATTGGTCGAACAATTGGCGAAGGTACATTTGCAAAAGTGAAATTTGCCAAAAATTCGGAGACTGGGGAACATGTAGCAATAAAGATCCTTGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATAAAGCGGGAAATTGCCACGATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGGAGCAAAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGCGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGAGATCTTAAGCCAGAAAATCTACTGTTAGATGCCTACGGGAATCTTAAAGTGTCCGACTTTGGATTGAGTGCACTATCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATGAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCAGAAATTTTGGAAGATGAATGGTTCAAAAAAGATTATAAACCCCCTGTTTTTGCGGAGCCGAAAATTGCAAACTTGGATGATGTAGAAGCTGTCTTTAAAGATTCAGAAGAACACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCGAAGGGGCTCAACCTGGAAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGTTCAGCTAATGAAATTGTAAATAAGATCGAGGAAGCTGCAAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTAAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCGACAGAGATTTTGCAAGTCGCGCCTTGTGTCCATGTGGTTGAGATGCGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTTTCCACCTCTCTGGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCAAGAAACAAAGTGA 1335 40.22 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKFAKNSETGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFAEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLENLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPCVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 306287 314528 - MELO3C014700.2.1 Cme05g00043 327106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00043 444 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00043 444 PANTHER - 7 437 - -
Cme05g00043 444 CDD STKc_SnRK3 17 272 - -
Cme05g00043 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cme05g00043 444 CDD CIPK_C 317 431 - -
Cme05g00043 444 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cme05g00043 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Cme05g00043 444 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Cme05g00043 444 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Cme05g00043 444 SUPERFAMILY Protein kinase-like (PK-like) 14 303 IPR011009 -
Cme05g00043 444 Pfam NAF domain 313 372 IPR004041 GO:0007165
Cme05g00043 444 SMART serkin_6 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00043 444 Gene3D Kinase associated domain 1, KA1 310 435 - -
Cme05g00043 444 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00043 444 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00636 Cme-Chr2:7400308 Cme05g00043 Cme-Chr5:306287 6.66E-83 dispersed
Cme03g01781 Cme-Chr3:26306656 Cme05g00043 Cme-Chr5:306287 0 dispersed
Cme05g00043 Cme-Chr5:306287 Cme12g01159 Cme-Chr12:19714735 0 dispersed
Cme11g02121 Cme-Chr11:28789254 Cme05g00043 Cme-Chr5:306287 3.49E-146 dispersed
Cme11g02310 Cme-Chr11:30160747 Cme05g00043 Cme-Chr5:306287 6.35E-50 dispersed
Cme05g00043 Cme-Chr5:306287 Cme08g00116 Cme-Chr8:871731 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64870 PF00069 Pkinase 1.10E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00043 - - csv:101221173 875.93