Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00090 ATGAGTACCATAATAGAATTCAGAGAGAAGGGGATGTATCAGCAACAGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCACCTTACATCGATAGATTCTCAACCAGCAACTTCTCGTCCTGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGCTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTTGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAATTGCTGCCCTACCTGTCGGCATGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTTCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTCAAACATGAGAAGAATTGTAAATATCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCATGTAACTGGTGACATTCCATCCCTCGTCATGCATCTCAAGGATGATCACGAGGTCGATATGCATGATGGATGCTCTTTCAGTCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTAACTGTTTTCAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCCTAGGAACAGCACCCGTTTACATGGCATTCCTCCGGTTCATGGGTGACGACAACGAAGCAAAACAATTTTCATACAGTCTTGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGCATTCCAAGAAGTATTCGCGATAGCCATCGGAAGGTTCGAGACAGTCATGATGGACTAATTATTCAGAGGAAATTGGCATTATTTTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGACGAATATGGAGAGTGAGGTGA 981 44.65 MSTIIEFREKGMYQQQKSREEHASSAASFCKEVTELHLTSIDSQPATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDNEAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVR 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 575735 577277 - MELO3C014659.2.1 Cme05g00090 327153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00090 326 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 187 319 IPR008974 GO:0005515
Cme05g00090 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 130 IPR013083 -
Cme05g00090 326 ProSiteProfiles Zinc finger RING-type profile. 78 114 IPR001841 -
Cme05g00090 326 ProSiteProfiles Zinc finger SIAH-type profile. 131 191 IPR013010 GO:0008270
Cme05g00090 326 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 27 324 - -
Cme05g00090 326 CDD RING-HC_SIAHs 76 114 - -
Cme05g00090 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 27 324 - -
Cme05g00090 326 SUPERFAMILY TRAF domain-like 131 322 - -
Cme05g00090 326 SUPERFAMILY RING/U-box 60 118 - -
Cme05g00090 326 Pfam Seven in absentia protein family 120 319 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cme05g00090 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 186 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00090 Cme-Chr5:575735 Cme10g00035 Cme-Chr10:314579 2.96E-156 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00090 K04506 - csv:101213438 684.871