Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00096 ATGGGTTCACCTAAAATGGCAGCCATTATTGTGGTGGCGGCTTTATTGATGCTATCACCTTCTCAAGCCCAGCTTTCTCCTTTCTTCTACGCCACCACTTGCCCTCAGCTGCCTTTCCTTGTTCTCAACGTGGTTGCCCAAGCCCTAGAGACTGATGACCGAGCTGCTGCCAAGCTCATTCGCCTCCATTTTCATGATTGCTTTGTCAATGGGTGTGATGGATCGATTCTATTGGTAGATGTACCAGGCGTCATCGATAGTGAACTTAATGGACCTCCAAATGAAGGAATCCAAGGAATGGACATTGTGGACAACATCAAAGCAACAGTTGAAAGTGCTTGTCCAGGAGTTGTTTCTTGTGCTGATATCTTAGCCATTTCATCTCAAATCTCTGTTTTCTTGTCGGGAGGACCAATTTGGGTTGTACCAATGGGAAGAAAAGACAGCAGAATAGCCAATAGAACTGGAACCTCAAACTTACCTGGTCCCTCAGAAACTCTAGTCGGACTTAAACGCAAGTTTAGAGATCAAGGGCTTGATTCTACAGATCTTGTGGCTCTATCAGGAGCCCACACGTTCGGAAAATCAAGATGCATGTTCTTCAGTGACCGCCTCGACAACTTCAACCAAACGGGAAGACCCGACCCAACGCTCGACCCAATATACAGGGAGCAGCTTCGAACAGTCTGTGCTACTCAACAAACACAACAACCACGAGCAAATTTCGACCCAGTCACACCCACTAGATTTGACAAGGCCTATTACAACAATTTGGTTAGCTTAAGAGGGCTCCTCCAAAGCGACCAAGAGCTCTTCTCAACTCCCAGGGCTGATACCACAGCCATTGTCAGGAATTTTGCTGCCAACGAGCGTGCCTTCTTCAAACAATTTGTGAAATCAATGATCAAAATGGGCAACCTCAAGCCTCCCCCCGGCATTGCATCCGAAGTTAGATTGGACTGTAAGAGGGTCAATCCAGTCAGGGCCTACGACGTCATGTAA 1002 47.11 MGSPKMAAIIVVAALLMLSPSQAQLSPFFYATTCPQLPFLVLNVVAQALETDDRAAAKLIRLHFHDCFVNGCDGSILLVDVPGVIDSELNGPPNEGIQGMDIVDNIKATVESACPGVVSCADILAISSQISVFLSGGPIWVVPMGRKDSRIANRTGTSNLPGPSETLVGLKRKFRDQGLDSTDLVALSGAHTFGKSRCMFFSDRLDNFNQTGRPDPTLDPIYREQLRTVCATQQTQQPRANFDPVTPTRFDKAYYNNLVSLRGLLQSDQELFSTPRADTTAIVRNFAANERAFFKQFVKSMIKMGNLKPPPGIASEVRLDCKRVNPVRAYDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 613597 615157 - MELO3C014654.2.1 Cme05g00096 327159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00096 333 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PANTHER PEROXIDASE 72-RELATED 16 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 Gene3D Peroxidase, domain 2 161 304 - -
Cme05g00096 333 Pfam Peroxidase 43 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 SUPERFAMILY Heme-dependent peroxidases 24 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PANTHER PEROXIDASE 58 16 325 - -
Cme05g00096 333 CDD secretory_peroxidase 24 324 IPR033905 GO:0004601|GO:0042744
Cme05g00096 333 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cme05g00096 333 ProSiteProfiles Plant heme peroxidase family profile. 24 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 Gene3D - 29 325 - -
Cme05g00096 333 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00096 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00096 Cme-Chr5:613597 Cme05g00098 Cme-Chr5:621341 2.62E-140 dispersed
Cme05g00095 Cme-Chr5:608631 Cme05g00096 Cme-Chr5:613597 1.46E-130 tandem
Cme05g00096 Cme-Chr5:613597 Cme05g00097 Cme-Chr5:616943 2.16E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00096 K00430 - csv:101211989 610.142