Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00097 ATGACTGCTTTGCCAATGCACGGGTGTGATGGATCTGTGCTACTGGAAGACGTACCTGGTGTTATCGACAGTGAGTTGAACGCACCTCCCAACAATGGAATCCAAGGGCTAGACATTGTGGATAACATCAAAGCAGCAGTTGAAAGCTCTTGTCCAGGCATTGTTTCTTGTGCTGACATATTAGCTCTCTCATCTCAAGTGGCTGTTGTACTGTCTGGAGGGCCGGCATGGATTGTCCCATTGGGAAGAAAAGACAGCAGAATAGCAAACAGAGCTGCAGCAGCAAATCTGCCAAGTCCCTTCGAAACTCTAGACGTGCTGAAATCCAAATTTGCAGCATTCGGGTTGAGTTCTACGGATCTTGTGACTCTATCGGGAGCGCACACGTTCGGTCGATCAAGATGTCTCTTCTTCACAGGACGGTTCGACAATTTCAACAACACCGGCCTACCGGACCCGACTTTGGATGCTGCATACAGGGAGCAGCTACGCCAACTTTGTGCCACTCCAGTAACAAGAGTAAACTTCGATCCAACCACACCAGACACATTCGATAAAAACTATTACGTTAATCTCCAAAACCATAAAGGGCTTCTCCAAAGTGATCAAGAGCTTTTCTCAACCCCTGGGGCTGATACAACTGCCATTGTCAACAGATTTGCTGCTAGCCAACTTCTGTTCTTTATTCAATTTGGTAATTCGATGATCAAAATGGGGAATCTTAGCCCTCCACCTGGCACCCCATCTGAAGTCAGATTGAACTGTAGGAGGATCAACCCATCCACGACCACCCTCCATGATGTTATCTAA 810 47.16 MTALPMHGCDGSVLLEDVPGVIDSELNAPPNNGIQGLDIVDNIKAAVESSCPGIVSCADILALSSQVAVVLSGGPAWIVPLGRKDSRIANRAAAANLPSPFETLDVLKSKFAAFGLSSTDLVTLSGAHTFGRSRCLFFTGRFDNFNNTGLPDPTLDAAYREQLRQLCATPVTRVNFDPTTPDTFDKNYYVNLQNHKGLLQSDQELFSTPGADTTAIVNRFAASQLLFFIQFGNSMIKMGNLSPPPGTPSEVRLNCRRINPSTTTLHDVI 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 616943 618444 - MELO3C014653.2.1 Cme05g00097 327160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00097 269 Gene3D - 7 259 - -
Cme05g00097 269 PANTHER PEROXIDASE 58 7 259 - -
Cme05g00097 269 PRINTS Plant peroxidase signature 119 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Plant peroxidase signature 175 190 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Plant peroxidase signature 191 208 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Plant peroxidase signature 73 88 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Plant peroxidase signature 35 48 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Plant peroxidase signature 233 246 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Plant peroxidase signature 54 64 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 SUPERFAMILY Heme-dependent peroxidases 7 260 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 ProSitePatterns Peroxidases proximal heme-ligand signature. 120 130 IPR019793 -
Cme05g00097 269 Gene3D Peroxidase, domain 2 98 238 - -
Cme05g00097 269 ProSiteProfiles Plant heme peroxidase family profile. 6 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 CDD secretory_peroxidase 7 258 IPR033905 GO:0004601|GO:0042744
Cme05g00097 269 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Haem peroxidase superfamily signature 120 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Haem peroxidase superfamily signature 55 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PRINTS Haem peroxidase superfamily signature 73 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 PANTHER PEROXIDASE 72-RELATED 7 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00097 269 Pfam Peroxidase 7 223 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00097 Cme-Chr5:616943 Cme05g00095 Cme-Chr5:608631 1.11E-115 dispersed
Cme05g00096 Cme-Chr5:613597 Cme05g00097 Cme-Chr5:616943 2.16E-127 tandem
Cme05g00097 Cme-Chr5:616943 Cme05g00098 Cme-Chr5:621341 4.43E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00097 K00430 - csv:101211752 499.204