Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00098 ATGGCTTCTTCTAACTCTACACTATTCTTCCCCTTGTTTTGCATATTGGGTTTGCTGGTGGGACACTCTTTGGCTCAACTAAACCCTTTGTTTTACGCCAAAACATGTCCTAATCTACCCAATATTGTGAATGCTGTCGTTGCAAAGGCTCTCCAAACCGATGCTCGAGCTGGAGCCAAGCTAATTCGTCTCCATTTTCATGACTGCTTTGTTGACGGGTGTGATGCGTCTGTTTTGCTAGAGAATGCACCAGGTATAGAGAGTGAACTAGATGCCCCTGGAAATCAGGGTATTCAAGGTCTTAAGATTGTCGACGACATCAAATCCGCTGTCGAAAAGGCTTGCCCTCGCACTGTCTCTTGTGCTGACATCTTAGCCATTGCCTCCAAAGAATCCGTCGTATTGGCTGGAGGGCCGAGCTGGGTTGTGCCGTTAGGACGAAGAGACAGCAGAACAGCCAATAAAGAAGGAGCCACGAACAACCTCGCCAGTCCCTTTGAAGATCTCAATGCACTCAAAGCCAAGTTTGGTGTTTTCGGTCTCGATTCCACTGATCTCGTGGCTTTGTCAGGAGCACATACATTTGGTCGTTCAAGGTGCGCATTTTTCAGCCAACGATTCGCTAACTTCAACAATACGAACATGCCAGACCCAACGCTGGACCCAGCCTACAGAAATCAGCTCCAAAGAATTTGCTCAAGTGGGTCAGAGACAAGAGCCAATTTTGATCCGACGACACCAGACAGATTTGACAAAAACTATTACACCAACCTTCAAGGGCTACGAGGACTTTTGCAAAGTGATCAAGTACTGTTCTCAACTCGTGGGGCTGACACAGTGGGGATCGTAAACCGGTTTGCCAAAAAGCAAGGCGAGTTCTTCAAAAGTTTTGGTCAGTCTATGATAAAAATGGGAAATATTACTCCTTTAACTGGGAACAAAGGAGAGATTAGATTGAATTGTAGGAGGGTTAATCCAAGAAGGCCCAGAACTGATGAAGGTCGTGATGTTATGTAA 1017 46.02 MASSNSTLFFPLFCILGLLVGHSLAQLNPLFYAKTCPNLPNIVNAVVAKALQTDARAGAKLIRLHFHDCFVDGCDASVLLENAPGIESELDAPGNQGIQGLKIVDDIKSAVEKACPRTVSCADILAIASKESVVLAGGPSWVVPLGRRDSRTANKEGATNNLASPFEDLNALKAKFGVFGLDSTDLVALSGAHTFGRSRCAFFSQRFANFNNTNMPDPTLDPAYRNQLQRICSSGSETRANFDPTTPDRFDKNYYTNLQGLRGLLQSDQVLFSTRGADTVGIVNRFAKKQGEFFKSFGQSMIKMGNITPLTGNKGEIRLNCRRVNPRRPRTDEGRDVM 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 621341 622925 - MELO3C014652.2.1 Cme05g00098 327161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00098 338 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 Gene3D Peroxidase, domain 2 163 304 - -
Cme05g00098 338 CDD secretory_peroxidase 26 324 IPR033905 GO:0004601|GO:0042744
Cme05g00098 338 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cme05g00098 338 Pfam Peroxidase 43 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PANTHER PEROXIDASE 72-RELATED 18 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Cme05g00098 338 ProSiteProfiles Plant heme peroxidase family profile. 26 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 Gene3D - 31 325 - -
Cme05g00098 338 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00098 338 PANTHER PEROXIDASE 58 18 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00091 Cme-Chr5:582040 Cme05g00098 Cme-Chr5:621341 4.23E-135 dispersed
Cme05g00092 Cme-Chr5:590473 Cme05g00098 Cme-Chr5:621341 8.19E-144 dispersed
Cme05g00094 Cme-Chr5:601610 Cme05g00098 Cme-Chr5:621341 7.02E-162 dispersed
Cme05g00095 Cme-Chr5:608631 Cme05g00098 Cme-Chr5:621341 1.59E-150 dispersed
Cme05g00096 Cme-Chr5:613597 Cme05g00098 Cme-Chr5:621341 2.62E-140 dispersed
Cme05g00098 Cme-Chr5:621341 Cme09g01539 Cme-Chr9:20471391 1.64E-140 dispersed
Cme05g00097 Cme-Chr5:616943 Cme05g00098 Cme-Chr5:621341 4.43E-124 tandem
Cme05g00098 Cme-Chr5:621341 Cme05g00099 Cme-Chr5:628079 8.77E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00098 K00430 - csv:101211507 626.32