Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00100 ATGGAAATCTCGAGCAGCAGAATGAAGGGACGGCGTTTTTCTTTGGTTATGATCATGATAATTTTGTTTATGATTTGTGGTTCCACTAGGTCTCAATTAACTGTAGATTTCTATAAAAGATCGTGTCCAAATGTGCTTAGGATGGTGAGGAGAGAAGTTATCAACGCTCTCAAGAACGATATGCGAATGGCTGCTTCCCTTCTTCGTCTCCACTTTCACGACTGCTTTGTTAGCGGTTGCGACGGATCTGTGCTGTTGGATGGGAGTGATGGAGAGCAAAATGCACTTCCCAACATCAATTCTCTTAGAGGGCTTGAAGTTGTGGATAGAATCAAAGCAGTAGTGGAGAATTCATGTCCCGGAGTTGTATCTTGTGCTGATATATTAACCATAGCTGCCAGAGATTCTGTTCTCTTGAGTGGAGGACCGGCATGGAAAGTATTATTGGGGAGAAGAGATGGATTGGTAGCAAATAGAACAGGAGCGGAGGAGCTTCCTTCTCCATTTGAAAGCCTTGATGCTATCACCAAGAAGTTCAACGATGTTGGCCTCGATACGACTGACGTCGTGGCTTTATCTGGAGCTCATACAATTGGATTTGCAAGATGTGCGATGTTCAACAATAGGCTGTTCAACTTCTCAGGAAGTGATTCTCCAGACCCAACCATGGAGTCCACAATGGTATCAGATCTTCAAGCTCTCTGCCCTCTCACCGACGACGGCAACAAGACCACCGTTCTCGACCGAAACTCAACCGATTTATTCGACAACCATTACTACAAGAACTTGCTGAATCAAAAGGGGCTGTTGGGGTCCGACCAAATCCTGTTCTCAAGCAATGAAGCTCAAACCACTACAAAAGCGTTGGTCGAAGCTTATAGCTCAAACGTTACGCTTTTCTTCAACGACTTTGTTAAAGCCATGATCAAGATGGGGAATATGAGCCCACTCACTGGCTCCAATGGACAGATCCGAAACAACTGTGGAATCGTTAATTCCTCTTAG 1005 44.78 MEISSSRMKGRRFSLVMIMIILFMICGSTRSQLTVDFYKRSCPNVLRMVRREVINALKNDMRMAASLLRLHFHDCFVSGCDGSVLLDGSDGEQNALPNINSLRGLEVVDRIKAVVENSCPGVVSCADILTIAARDSVLLSGGPAWKVLLGRRDGLVANRTGAEELPSPFESLDAITKKFNDVGLDTTDVVALSGAHTIGFARCAMFNNRLFNFSGSDSPDPTMESTMVSDLQALCPLTDDGNKTTVLDRNSTDLFDNHYYKNLLNQKGLLGSDQILFSSNEAQTTTKALVEAYSSNVTLFFNDFVKAMIKMGNMSPLTGSNGQIRNNCGIVNSS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 631104 633108 - MELO3C014650.2.1 Cme05g00100 327163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00100 334 SUPERFAMILY Heme-dependent peroxidases 32 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 CDD secretory_peroxidase 32 331 IPR033905 GO:0004601|GO:0042744
Cme05g00100 334 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 Pfam Peroxidase 49 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cme05g00100 334 PANTHER PEROXIDASE 59 16 331 - -
Cme05g00100 334 ProSiteProfiles Plant heme peroxidase family profile. 32 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PANTHER PEROXIDASE 72-RELATED 16 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme05g00100 334 Gene3D Peroxidase, domain 2 166 314 - -
Cme05g00100 334 Gene3D - 38 332 - -
Cme05g00100 334 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01208 Cme-Chr2:17409595 Cme05g00100 Cme-Chr5:631104 6.60E-98 dispersed
Cme05g00100 Cme-Chr5:631104 Cme08g00553 Cme-Chr8:3469424 2.80E-115 dispersed
Cme11g02446 Cme-Chr11:31195476 Cme05g00100 Cme-Chr5:631104 2.33E-71 dispersed
Cme05g00099 Cme-Chr5:628079 Cme05g00100 Cme-Chr5:631104 4.13E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00100 K00430 - csv:101211257 607.831