Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00141 ATGGATTCGTCTCACCCATCGTCCCCACCGGAGCTTGATCTTCACAGTCTCAGACCCATCAAGGTGCTTGGAAAGGGAGCCATGGGGACTGTATTTCTCGTCCACGATCGAATTTCTGACGAGTCTGCTCATTTCCCCTTTGCTCTTAAGGTCGTTGAGAAATCCTCTTTTGCTTCCAAAGTCGACGCCGAGCGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCTTTCCCTAAACCTCACCCTTTTCTTCCCGACATTGTTGGTTCTTTCGAATCCGATGAGTTTTTGGGTTGGGCTGTTCCGTACTGTCCCGGGGGCGATCTTAATGTCTTGCGTTACCGTCAATTGGACCGGGTTTTCTCTCCGGCTGTCATTCGGTTTTATTTGGCGGAGATCGTTTGTGCGCTGGACCACCTTCATAGTATGGGTATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATTCAACAATCGGGTCACGTTACTCTCACCGACTTCGATCTCTCGCGTACTTTGACACGTAGAACAGTAAAAGACGTTGTCTCTCTTGAAAATTCCGGTCATGAGAAGCCGCCGATCGCCGTAAGACGAAAACCGGGGCGGAACTTGACACGGTGGATCATGTCGACCTCTAACGTTAAAAACGGGTCAAAAAAGGCTAAATCGGCTCGGGTTAGTCCGGTGAGTCGTCGGAAGTCGAGTTTCACCAATGGCGAACGGTCGAATTCGTTCGTCGGAACGGAGGAGTATGTCTCACCGGAAATTGTTCGAGGAGACGGACATGAATTCGCCGTCGATTGGTGGGCTCTAGGGATTCTCACATACGAGATGCTCTACGGGGCGACACCGTTCAAGGGGAAAAACCGGAAAGAGACGTTTCGAAACGTTTTGGTCAAAGCTCCGGAGTTGATCGGAAAGCGATCGGATTTAACGGATTTGATCGAAAGGTTGCTCGTAAAGGACCCCACGAAGCGGTTGGGGTACGTACGAGGCGCGTGCGAAATCAAAGAGCATGCGTTCTTTAACGGTGTTAAGTGGGACCTACTAACGGAAGTCACGCGACCGCCCTTTTTACCTCATCGTGAAGAAACGGAATGGACGGGGAATTTAACGCTCGGTTGTGAGAGTATTACGGAATACTTTCACAAACAAAGATCACCGCCTTCGTTTCCACCGTCGCCGTCGTCAACTACACCGTCGACGTCTTTCAGTTGGCAGAATGACATGTCTTTGACAGAGTTCTAA 1257 50.28 MDSSHPSSPPELDLHSLRPIKVLGKGAMGTVFLVHDRISDESAHFPFALKVVEKSSFASKVDAERRARWEIQVLSRLSFPKPHPFLPDIVGSFESDEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRTLTRRTVKDVVSLENSGHEKPPIAVRRKPGRNLTRWIMSTSNVKNGSKKAKSARVSPVSRRKSSFTNGERSNSFVGTEEYVSPEIVRGDGHEFAVDWWALGILTYEMLYGATPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYVRGACEIKEHAFFNGVKWDLLTEVTRPPFLPHREETEWTGNLTLGCESITEYFHKQRSPPSFPPSPSSTTPSTSFSWQNDMSLTEF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 958801 960104 - MELO3C014610.2.1 Cme05g00141 327204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00141 418 Gene3D Transferase(Phosphotransferase) domain 1 110 178 - -
Cme05g00141 418 SUPERFAMILY Protein kinase-like (PK-like) 18 408 IPR011009 -
Cme05g00141 418 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Cme05g00141 418 SMART serkin_6 17 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00141 418 Gene3D Phosphorylase Kinase; domain 1 18 109 - -
Cme05g00141 418 MobiDBLite consensus disorder prediction 400 418 - -
Cme05g00141 418 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 12 392 - -
Cme05g00141 418 Gene3D Transferase(Phosphotransferase) domain 1 241 364 - -
Cme05g00141 418 MobiDBLite consensus disorder prediction 222 244 - -
Cme05g00141 418 PANTHER FLIPPASE KINASE 1-RELATED 12 392 - -
Cme05g00141 418 Pfam Protein kinase domain 20 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00141 418 Pfam Protein kinase domain 239 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00141 418 MobiDBLite consensus disorder prediction 387 418 - -
Cme05g00141 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Cme05g00141 418 ProSiteProfiles Protein kinase domain profile. 17 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01842 Cme-Chr1:26077450 Cme05g00141 Cme-Chr5:958801 2.86E-98 dispersed
Cme05g00141 Cme-Chr5:958801 Cme08g01025 Cme-Chr8:6653770 4.51E-77 dispersed
Cme05g00141 Cme-Chr5:958801 Cme08g01220 Cme-Chr8:8594012 2.18E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64876 PF00069 Pkinase 5.80E-30 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00141 - K08286 csv:101207338 787.719