Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00142 ATGAGTGTTGTTGATCAACTACGTACAGAAGAGGAAGCAGCAGAAGCATACGACATAGCGGCTATAAAATTCAGAGGGCTAAATGCAGTAACAAACTTCGATATGAGTCGTTACGATGTGAAAAGCATATTAGAGAGCAACACACTCCCAATTGGTGGTGGTGCTGCAAAGCGACTAAAGGAAGCTCAAGCCGTGGAATCGTCTCGAAAGCGAGACGAAATGATTGCATTAGGTTCCTCTTCGTCCTCCTCTTCTTGCTTCCAATATGGAACTTCTTCCTCTTCCACAACTAACTCTTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATAGACCATCACCATCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCACGACATTTCTCATTACGCTCACCATCCTTCCTCGTTCCACAACCCTTCTTCTTCTTACATCCACCATTCATCTGATCATTCCTCTTACCCTAACAACAACAACAACAATCATCCATTTTACGGTGCCGGGTATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATTAACATGAGCGGCGGAGGTGGTGGCGGAGGAGGAGGAGGAGCTTCTAGTTTGGACAATAACAACAATACTAATGCATTGAGTCATTATGAGAGTAATAGTAATGGAGGGGGAGGGTATCTTGGGAATGCATTTGGGATTGGTTCTGCATCCGGCAGTGCAGCGGAGGAATATGCCCTCGTTAAGGTTGACTATGACATGCCTAATTCCGGTGGGTACGGCGGTTGGACCGGGGATTCTGTCCAAGGTTCTAACGCTGGGGTTTTCTCCATGTGGAATGATTGA 840 45.6 MSVVDQLRTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAVESSRKRDEMIALGSSSSSSSCFQYGTSSSSTTNSSHYPNLLQQPNLNIDHHHLQTQPLLSLQNHHDISHYAHHPSSFHNPSSSYIHHSSDHSSYPNNNNNNHPFYGAGYLHNHPALLHGMINMSGGGGGGGGGGASSLDNNNNTNALSHYESNSNGGGGYLGNAFGIGSASGSAAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 970867 972094 - MELO3C014609.2.1 Cme05g00142 327205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00142 279 MobiDBLite consensus disorder prediction 139 164 - -
Cme05g00142 279 SMART rav1_2 3 40 IPR001471 GO:0003700|GO:0006355
Cme05g00142 279 Gene3D AP2/ERF domain 4 36 IPR036955 GO:0003700|GO:0006355
Cme05g00142 279 MobiDBLite consensus disorder prediction 135 164 - -
Cme05g00142 279 MobiDBLite consensus disorder prediction 65 101 - -
Cme05g00142 279 MobiDBLite consensus disorder prediction 74 101 - -
Cme05g00142 279 SUPERFAMILY DNA-binding domain 9 36 IPR016177 GO:0003677
Cme05g00142 279 ProSiteProfiles AP2/ERF domain profile. 1 34 IPR001471 GO:0003700|GO:0006355
Cme05g00142 279 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 278 - -
Cme05g00142 279 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00142 Cme-Chr5:970867 Cme05g01005 Cme-Chr5:14308733 3.36E-24 dispersed
Cme05g00142 Cme-Chr5:970867 Cme03g02125 Cme-Chr3:28479280 2.06E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00142 K09285 - csv:101207097 434.491