Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00143 ATGGGATCCATGAATTCAAACAATTGGCTTTCGTTTCCACTTTCACCCACCAATCCTTCTTTGCCACCACATCTTCAAACCACAACTCATCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGATATCCCATTTCAAACCCATGAGTGGAATCTGATAAGTAATCAAGGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAAGCAGAAAATGAAACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGTAATGATACAGATTATTTGTTCCCAATCACAAGATTAGTTCCTCTTCATCAACAACAACAACAACAAACACTTACTCCTCCTCCTCCTTCTAATATAAATCTTGACTCTTCTTCTTCTTCTAACTTTGACCTTCAAGATAATTCCAACTGTTTACAATCTTTGACTCTCTCGATGGGTAGTGGTAAACCCTCTACTTGTGAAACAACCTCCACCCCTGATAATAACACCACATCCAACAACAGCAACAACAGCAATAATACCACTCTCGACGTCACCCCTCGAAGAACTTTGGACACTTTTGGTCAAAGAACTTCCATTTATCGTGGTGTAACCAGGCATAGATGGACCGGAAGGTATGAAGCGCATTTGTGGGATAATAGTTGTAGAAGGGAAGGACAGTCAAGGAAGGGTAGGCAAGGTGGGTATGATAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCTGCATTGAAATATTGGGGAACATCCACCACCACAAATTTTCCTATCAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACCAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGCAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGTTTCTTATTTTTTAA 930 39.57 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHHSHHFSLGNLENDHNMDIPFQTHEWNLISNQGGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVPLHQQQQQQTLTPPPPSNINLDSSSSSNFDLQDNSNCLQSLTLSMGSGKPSTCETTSTPDNNTTSNNSNNSNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRFLIF 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 972392 974313 - MELO3C027183.2.1 Cme05g00143 327206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00143 309 CDD AP2 199 265 IPR001471 GO:0003700|GO:0006355
Cme05g00143 309 Gene3D AP2/ERF domain 200 265 IPR036955 GO:0003700|GO:0006355
Cme05g00143 309 SMART rav1_2 200 269 IPR001471 GO:0003700|GO:0006355
Cme05g00143 309 MobiDBLite consensus disorder prediction 111 186 - -
Cme05g00143 309 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 306 - -
Cme05g00143 309 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 306 - -
Cme05g00143 309 PRINTS Ethylene responsive element binding protein signature 245 265 IPR001471 GO:0003700|GO:0006355
Cme05g00143 309 PRINTS Ethylene responsive element binding protein signature 201 212 IPR001471 GO:0003700|GO:0006355
Cme05g00143 309 ProSiteProfiles AP2/ERF domain profile. 200 263 IPR001471 GO:0003700|GO:0006355
Cme05g00143 309 SUPERFAMILY DNA-binding domain 199 265 IPR016177 GO:0003677
Cme05g00143 309 Pfam AP2 domain 200 255 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00143 Cme-Chr5:972392 Cme05g01005 Cme-Chr5:14308733 3.41E-10 dispersed
Cme05g00143 Cme-Chr5:972392 Cme07g00259 Cme-Chr7:1695945 1.97E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41305 PF00847 AP2 1.10E-09 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00143 K09285 - csv:101207097 558.14