Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00148 ATGGATCTGTATGGAAAACCAAGAATGTGGTTGATAGTGATCGCTCATCATCGTTTAGGGTGTGGTTTCTTTTTTAAGCGTACTTGTAATTTTGTCGTTCACTTTCTGATGCATATGTGGGGGCATGGATCACAATACAGGAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGTTGAGGCTGCCATGTTACTGTTGTGCAATAGGATGCAGAAACAACATAGACCATCCAAGATCAAAGCCATTAAAAGACTTCAGAACACTTCAAACACATTACAAAAGAAAACATGGGATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTTAGAGGAGACTGGAGAACACATGAGAAGAATTGTGGGAAACTTTGGCATTGCACATGTGGCTCTGATTTTAAGCATAAAAGGTCTCTTAAAGATCATATCAAAGCCTTTGGACTTGGCCATGCTGCTTATGGGATTGATGATCATCATAATCATCATCATTCTTTTGATAATGAAGATGATGACCCAGCTTCTGATATTGAAACATGA 552 39.13 MDLYGKPRMWLIVIAHHRLGCGFFFKRTCNFVVHFLMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAIGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGLGHAAYGIDDHHNHHHSFDNEDDDPASDIET 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1007240 1008517 - MELO3C014606.2.1 Cme05g00148 327211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00148 183 PANTHER ZINC FINGER PROTEIN WIP2 11 182 IPR043584 GO:0003700|GO:0010468
Cme05g00148 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Cme05g00148 183 Gene3D Classic Zinc Finger 65 151 - -
Cme05g00148 183 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 11 182 - -
Cme05g00148 183 SUPERFAMILY beta-beta-alpha zinc fingers 90 124 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02208 Cme-Chr4:29302073 Cme05g00148 Cme-Chr5:1007240 2.13E-87 dispersed
Cme05g00148 Cme-Chr5:1007240 Cme08g01721 Cme-Chr8:19518035 8.91E-87 dispersed
Cme01g02478 Cme-Chr1:32921653 Cme05g00148 Cme-Chr5:1007240 2.62E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41306 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00148 - - csv:101212231 328.561