Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g00165 | ATGCAGTCAAAGTCTAAAAGTGTGAATCAACCAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCGGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCAGCAGCCGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACCAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGATGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGAACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACGCAGCCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTACGCAGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCGTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATTAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACTATGAAGGATAAGGACTCCGGTTCTGGTCAAGCTATCTCATCCCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCACTGTGCCTTGGCCGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGCAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTGCGATCTGGTGAGAGAGGCGATGATGGAGACTGCTCGGGACAGCAGCGAAGTATCTCAGAAAATCAGGCTGCTCAGAGGCGTCTTGCCATCAAGTGA | 1026 | 46.1 | MQSKSKSVNQPESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQNNCQHAVSAAPIVHSGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGSGQAISSHSAGSSGSEAAHCALAETWNSSNGQQEARTQLHEAYEARSYVNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQRSISENQAAQRRLAIK | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1122899 | 1128014 | + | MELO3C014590.2.1 | Cme05g00165 | 327228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g00165 | 341 | PRINTS | CCAAT-binding transcription factor subunit B signature | 169 | 191 | IPR001289 | GO:0003700|GO:0006355 | |
Cme05g00165 | 341 | PRINTS | CCAAT-binding transcription factor subunit B signature | 200 | 223 | IPR001289 | GO:0003700|GO:0006355 | |
Cme05g00165 | 341 | MobiDBLite | consensus disorder prediction | 206 | 220 | - | - | |
Cme05g00165 | 341 | ProSiteProfiles | NF-YA/HAP2 family profile. | 166 | 226 | IPR001289 | GO:0003700|GO:0006355 | |
Cme05g00165 | 341 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 31 | 328 | - | - | |
Cme05g00165 | 341 | MobiDBLite | consensus disorder prediction | 224 | 256 | - | - | |
Cme05g00165 | 341 | MobiDBLite | consensus disorder prediction | 307 | 341 | - | - | |
Cme05g00165 | 341 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
Cme05g00165 | 341 | MobiDBLite | consensus disorder prediction | 41 | 68 | - | - | |
Cme05g00165 | 341 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 31 | 328 | IPR001289 | GO:0003700|GO:0006355 | |
Cme05g00165 | 341 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 168 | 223 | IPR001289 | GO:0003700|GO:0006355 | |
Cme05g00165 | 341 | MobiDBLite | consensus disorder prediction | 206 | 258 | - | - | |
Cme05g00165 | 341 | Gene3D | - | 166 | 228 | - | - | |
Cme05g00165 | 341 | SMART | cbf3 | 165 | 226 | IPR001289 | GO:0003700|GO:0006355 | |
Cme05g00165 | 341 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 171 | 191 | IPR018362 | GO:0003677|GO:0016602 | |
Cme05g00165 | 341 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00537 | Cme-Chr2:5584154 | Cme05g00165 | Cme-Chr5:1122899 | 9.39E-93 | dispersed | |
Cme04g02314 | Cme-Chr4:30087848 | Cme05g00165 | Cme-Chr5:1122899 | 8.85E-31 | dispersed | |
Cme05g00165 | Cme-Chr5:1122899 | Cme08g00086 | Cme-Chr8:579585 | 6.02E-33 | dispersed | |
Cme08g01561 | Cme-Chr8:15575873 | Cme05g00165 | Cme-Chr5:1122899 | 1.58E-17 | transposed | |
Cme01g02466 | Cme-Chr1:32840431 | Cme05g00165 | Cme-Chr5:1122899 | 4.64E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41309 | PF02045 | CBFB_NFYA | 1.90E-26 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g00165 | K08064 | - | csv:101212961 | 637.106 |