Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00165 ATGCAGTCAAAGTCTAAAAGTGTGAATCAACCAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCGGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCAGCAGCCGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACCAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGATGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGAACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACGCAGCCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTACGCAGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCGTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATTAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACTATGAAGGATAAGGACTCCGGTTCTGGTCAAGCTATCTCATCCCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCACTGTGCCTTGGCCGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGCAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTGCGATCTGGTGAGAGAGGCGATGATGGAGACTGCTCGGGACAGCAGCGAAGTATCTCAGAAAATCAGGCTGCTCAGAGGCGTCTTGCCATCAAGTGA 1026 46.1 MQSKSKSVNQPESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQNNCQHAVSAAPIVHSGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGSGQAISSHSAGSSGSEAAHCALAETWNSSNGQQEARTQLHEAYEARSYVNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQRSISENQAAQRRLAIK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1122899 1128014 + MELO3C014590.2.1 Cme05g00165 327228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00165 341 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Cme05g00165 341 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Cme05g00165 341 MobiDBLite consensus disorder prediction 206 220 - -
Cme05g00165 341 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Cme05g00165 341 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 328 - -
Cme05g00165 341 MobiDBLite consensus disorder prediction 224 256 - -
Cme05g00165 341 MobiDBLite consensus disorder prediction 307 341 - -
Cme05g00165 341 MobiDBLite consensus disorder prediction 1 87 - -
Cme05g00165 341 MobiDBLite consensus disorder prediction 41 68 - -
Cme05g00165 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 328 IPR001289 GO:0003700|GO:0006355
Cme05g00165 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
Cme05g00165 341 MobiDBLite consensus disorder prediction 206 258 - -
Cme05g00165 341 Gene3D - 166 228 - -
Cme05g00165 341 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Cme05g00165 341 ProSitePatterns NF-YA/HAP2 subunit signature. 171 191 IPR018362 GO:0003677|GO:0016602
Cme05g00165 341 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00537 Cme-Chr2:5584154 Cme05g00165 Cme-Chr5:1122899 9.39E-93 dispersed
Cme04g02314 Cme-Chr4:30087848 Cme05g00165 Cme-Chr5:1122899 8.85E-31 dispersed
Cme05g00165 Cme-Chr5:1122899 Cme08g00086 Cme-Chr8:579585 6.02E-33 dispersed
Cme08g01561 Cme-Chr8:15575873 Cme05g00165 Cme-Chr5:1122899 1.58E-17 transposed
Cme01g02466 Cme-Chr1:32840431 Cme05g00165 Cme-Chr5:1122899 4.64E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41309 PF02045 CBFB_NFYA 1.90E-26 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00165 K08064 - csv:101212961 637.106