Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00219 ATGGAACTCAGAAAGTACAAACCCGATCCTCTTTCTCCCGCCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCCATCTCCGGCCGATCCGCCGTCCACGCCTACAAAAACCACACCGTCGGCGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTACCAGAAATGGACCGCCGGTAAAACCTTCGGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTTGTGCAAACATACAATTTCACCACATACAAACTTTGCGACTACGACGACGCATCAGAAAACGACACGACGGAATGGTCCGCCGCCGATCCATCAGCAACCACTCCCTACGCCGTGATGGTGGCTGTCCCCTTGGTTAAAGAAGGCCCCAACTATTTCTTCTCTGGCAACTACGACGGAGAGCAATGCCAGAATGGGCAACAATTCAAAATAAACGTCACTCATGGACAGGGCCTCCCTAAAAGCATGGGAGATCCTTCGGACGAAGCTCCGGCTCCGGTAGTTCCCGACACCGGCGATCAAACCGAAGCTGCACCCGACACCATTGTCCCTTCCAGCTTCGACAATCCTCGAAACGATGTCGCCGATAACGATAAGGAATCTTCGAGCTCCAATTCTATATCGCTTGTTTATTGCTTCAAGTTTAATGAGTTCTTCTTCTTGTTAATTGGTATTGCCTCTGCCTGCTTTTTGTCTCTGTACTGA 726 50.83 MELRKYKPDPLSPAFLLLLLLLLSISGRSAVHAYKNHTVGDSLGWFDKLEKPAVDYQKWTAGKTFGLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASENDTTEWSAADPSATTPYAVMVAVPLVKEGPNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMGDPSDEAPAPVVPDTGDQTEAAPDTIVPSSFDNPRNDVADNDKESSSSNSISLVYCFKFNEFFFLLIGIASACFLSLY 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1552503 1556819 - MELO3C014540.2.1 Cme05g00219 327282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00219 241 Gene3D - 34 158 IPR008972 -
Cme05g00219 241 PANTHER BNAA08G26900D PROTEIN 12 177 - -
Cme05g00219 241 Pfam Plastocyanin-like domain 45 147 IPR003245 GO:0009055
Cme05g00219 241 SUPERFAMILY Cupredoxins 35 153 IPR008972 -
Cme05g00219 241 MobiDBLite consensus disorder prediction 155 210 - -
Cme05g00219 241 CDD Phytocyanin 35 153 - -
Cme05g00219 241 PANTHER BLUE COPPER PROTEIN 12 177 IPR039391 GO:0009055
Cme05g00219 241 ProSiteProfiles Phytocyanin domain profile. 35 155 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00219 - - - cmo:103491450 484.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00219 Cme-Chr5:1552503 Cme03g01843 Cme-Chr3:26762201 1.16E-12 dispersed
Cme05g00219 Cme-Chr5:1552503 Cme11g02525 Cme-Chr11:31722171 2.10E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01900 . 33 167 Phytocyanin Superfamily AT1G48940 53.5 1.0e-36 150.2
Cme04g02021 . 24 180 Phytocyanin Superfamily AT5G15350 54.4 3.2e-48 188.3
Cme12g01900 . 33 167 Phytocyanin Superfamily AT1G48940 53.5 1.0e-36 150.2
Cme04g02021 . 24 180 Phytocyanin Superfamily AT5G15350 54.4 3.2e-48 188.3
Cme05g00219 . 16 226 Phytocyanin Superfamily AT1G08500 54.6 9.1e-59 223.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00219 Cme_Chr05 FPKM 8.721436 8.39718 3.959236 4.437016 5.738829 5.352391 6.390513 0.32382 0.283066 0.253429