Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00222 ATGAAATATTGTATTAATGCCCTCCGACTTACAAGATGGATAATGTTTCTAGAAGCTTTTGCAGCCATCCTCGCCGCATCGCCGCTGATTCCAACAGAGAAGTCGCAACTAGACGAGTGGTATTGGGAGAATGTGAAGGCGTTTGGCAATCGTAATAAGGCGGAGCTTGATCCGGAGTTGGTGGCTGCAGAAGAAAGTGCCACCGTGATTAAGGTAAGGGGTGATGGAAGTGGAGATTTCAAGACAATTGCTGAAGCCATTGAAAGCGTGCCAATTGGCAACACAAAACGTATAGTGATTTGGATAGGAGGAGGAGTTTATAAAGAGAAGCTTAAGATCGATAGAAATAAGCCTTTCGTTACTCTTTATGGATCTCCTAATAATATGCCTAATTTGACCTTTGATGGTGATGCTAGCAAATACGGCACAGTTTATAGTGCTACCTTGATTGTTGAAGCTGATTATTTCACTGCAGCTAATCTGGTCATTGAGAATTCATCGCCAAGGCCAGATGGGGTAAGAAAAGGAGCACAAGCATTAGCAGCAAGAATTAGGGGAAATAAAGCTGCAATTTATAATTGCAAATTTATTGGATTTCAAGATACCCTTTGTGACGACGACGGTTTACATCTCTACAAAGATTGCTTCATTCAAGGCACCGTTGATTTCATTTTTGGAAAAGGAACTTCCCTTTATTTGAACACTCAGCTAGATGTGGTGGGCAATGGAGGATTAGGAGTGATAGCAGCCCATTCAAGAGACCAAGAATCTGACGGCAGTGGATATTCATTTGTGCATTGTAGCATTACAGGAACCGGCGGAAGAAACACGTATTTGGGAAGAGCTTGGAGGCCAAGATCTAGAGTTGTTTTTGCCTACACTACAATGGCTGATATTATTCATCCCGAAGGCTGGAACGACATGAATCATTTTGGTTATGACAAAACGGTTTTGTTTGGAGAATACAAGTGTTGGGGGCCAGGATCGAAGTCAAGCGAGCGTGTAAAATACAGCAAGCAGTTGAGTTATGAAGAAGTGGAGCCATTTGTAAGTCTTGGATACGTGCAGAGTGAAAAGTGGCTACTTCCTCCTCCCAATCCTGAAATTTAG 1110 42.52 MKYCINALRLTRWIMFLEAFAAILAASPLIPTEKSQLDEWYWENVKAFGNRNKAELDPELVAAEESATVIKVRGDGSGDFKTIAEAIESVPIGNTKRIVIWIGGGVYKEKLKIDRNKPFVTLYGSPNNMPNLTFDGDASKYGTVYSATLIVEADYFTAANLVIENSSPRPDGVRKGAQALAARIRGNKAAIYNCKFIGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNTQLDVVGNGGLGVIAAHSRDQESDGSGYSFVHCSITGTGGRNTYLGRAWRPRSRVVFAYTTMADIIHPEGWNDMNHFGYDKTVLFGEYKCWGPGSKSSERVKYSKQLSYEEVEPFVSLGYVQSEKWLLPPPNPEI 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1569834 1571992 - MELO3C031057.2.1 Cme05g00222 327285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00222 369 Gene3D - 63 364 IPR012334 -
Cme05g00222 369 SUPERFAMILY Pectin lyase-like 66 362 IPR011050 -
Cme05g00222 369 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Cme05g00222 369 PANTHER PECTINESTERASE 63-RELATED 33 362 - -
Cme05g00222 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 362 - -
Cme05g00222 369 Pfam Pectinesterase 71 356 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00333 Cme-Chr2:2731403 Cme05g00222 Cme-Chr5:1569834 7.34E-135 dispersed
Cme05g00222 Cme-Chr5:1569834 Cme07g01488 Cme-Chr7:20767836 7.31E-81 dispersed
Cme05g00222 Cme-Chr5:1569834 Cme05g00223 Cme-Chr5:1574767 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00222 K01051 - csv:101205095 599.742