Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00223 ATGAAACTTCGCATGGATGCACTCGCTATTACAAGATTGGTAACTTTCCTAGCAACTTTTACAACCATCTTGGCCGTCTCGACCCCGATCCCGGTTGAGAAGTCGCAAATAGACGCGTGGTTTTCACAAAATGTGAAGCCGTTAGCCGATCGTAAGGCGGAGCTTGATCCTGCTTTGGTGGCTGCGGAAGAAAATGCAACCATAATTAAAGTAATGAGCGATGGAACAGGAGATTTCAAGACAATCACTGAAGCTATTGCGAGCGTGCCAGCAGACAACAAGAAACGTGTAATGATTTCGATTGGAGATGGCATTTATAAGGAGAAGCTTAAGATAGATAGAAATAAGCCTTTTGTTACTCTTTATGGCTCTCCGAAGGGTATGCCTAAGTTGACTTTTGATGGCGATGCTGCCAAATTCGGCACCGTTTATAGTGCTACCTTGATTGTTGAAGCGGATTATTTCACTGCAGCTAATCTGGTCATTGAGAATTCGTCACCGAGGCCAGATGGGGTAAGAAAAGGAGCACAAGCATTAGCGGCAAGATTTATGGGAACTAAAGCTGCAATTTACAATTGCAAATTCACTGGATTTCAAGATACCCTTTGCGATGATGATGGTTTACATTTCTACAAAGATTGCTTCATTCAAGGAACCGTTGATTTCATTTTTGGAAAAGGAACTTCCCTCTATGTGAATACTCAATTGGATGTAGCGGGAGACGGAGGATTAGCAGTGATAACAGCCCATTCAAGAGAACAAGAATCTGATGGTAGTGGATATTCGTTTGTGCATTGCAGTATTACTGGAACGGGCGGTAAAAACACTTTTTTGGGAAGAGCTTGGATGCCAAGATCTAGAGTTGTCTTTGCCTACACTACAATGGCTGATATCATTCATCCTGAAGGCTGGAACGACATGAAACATGCTGGTTTCGACAAGACAGTTATGTTTGGAGAATACAAATGTTCGGGGCCAGGATCAGTGTCAACCGAACGTGTACCCTATGGCAAGCAATTGAGTGATGCAGAAGTGAATCCATTTCTTAGTCTCGCATATGTGCAAAGTGAGAAATGGTTGCTTCCTCCTCCCAATCCTCAAGTTTAG 1107 43.09 MKLRMDALAITRLVTFLATFTTILAVSTPIPVEKSQIDAWFSQNVKPLADRKAELDPALVAAEENATIIKVMSDGTGDFKTITEAIASVPADNKKRVMISIGDGIYKEKLKIDRNKPFVTLYGSPKGMPKLTFDGDAAKFGTVYSATLIVEADYFTAANLVIENSSPRPDGVRKGAQALAARFMGTKAAIYNCKFTGFQDTLCDDDGLHFYKDCFIQGTVDFIFGKGTSLYVNTQLDVAGDGGLAVITAHSREQESDGSGYSFVHCSITGTGGKNTFLGRAWMPRSRVVFAYTTMADIIHPEGWNDMKHAGFDKTVMFGEYKCSGPGSVSTERVPYGKQLSDAEVNPFLSLAYVQSEKWLLPPPNPQV 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1574767 1576786 + MELO3C014536.2.1 Cme05g00223 327286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00223 368 Pfam Pectinesterase 70 355 IPR000070 GO:0030599|GO:0042545
Cme05g00223 368 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Cme05g00223 368 Gene3D - 63 363 IPR012334 -
Cme05g00223 368 PANTHER PECTINESTERASE 63-RELATED 34 361 - -
Cme05g00223 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 361 - -
Cme05g00223 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00223 Cme-Chr5:1574767 Cme07g01488 Cme-Chr7:20767836 6.75E-79 dispersed
Cme05g00222 Cme-Chr5:1569834 Cme05g00223 Cme-Chr5:1574767 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00223 K01051 - csv:101205095 665.225