Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme05g00225 | ATGGCGGCTCGAGCTGTTGTTCCTCAGCGACAACTACGAATCAGAGATGAAGGTAAGCCGAAAGTGGTAGCAGCTGAAGGAAGAACAAGAAGAATTCTCAAAGACATAGGCAATCTCGTGCCTGATCAAGCCGTAGAAGGGAAACACGGACCTCAACCACCAGAGAAGAATAAAAGAGCAATCACCAAAAAAATAGATGGAGGAGTTGGGAAGGGAGTTAATGTAACGAAGGCAACAATCACTGAGAAACCAAAGCCGAAACCGAAGACTGTACTCAGCTTGGCCGACGAGGGACACATAATCAACATCAAGGATACTAAATCAAGGGACAAGAATAAGAGATCTCTGACTTCAACACTTAGTGCTAGAAGCAAGGCTGCTTGTGGAATCACCAATAAACCACTGGATTCTTCAGTAGCTAATATTGATGAAGCAGATGCCAACAATGAGTTGGCCGTAGTTGAATACATCGATGACATGTACAAGTTTTACAAGCTTGCAGAAGGTGAGAGCAAAGTATCAGATTACATGGGAACACAACCAGATTTGAATGCTAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTCCATCGAAAGTTTGAATTGATGCCGGAAACCCTTTATCTCACTGTAAACATCGTCGATCGATTTCTTTCCTTAAAGACTGTACCAAGGAAGGAACTTCAATTGGTAGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTCGTAAGTATATCTGCAAATACTTATCAAAGAGAAGAAATTCTGGTGATGGAGAAAGTAATCTTGGGTAGGCTGGAATGGCTTCTAACTGTTCCTACCCCTTATGTTTTTCTTGTTCGATATGTCAAGGCTTCTGAGCCATCTGATGATGAGGTTAGTTGTGGGATTCTATAA | 936 | 41.99 | MAARAVVPQRQLRIRDEGKPKVVAAEGRTRRILKDIGNLVPDQAVEGKHGPQPPEKNKRAITKKIDGGVGKGVNVTKATITEKPKPKPKTVLSLADEGHIINIKDTKSRDKNKRSLTSTLSARSKAACGITNKPLDSSVANIDEADANNELAVVEYIDDMYKFYKLAEGESKVSDYMGTQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRKELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREEILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEVSCGIL | 311 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1579347 | 1583147 | - | MELO3C014534.2.1 | Cme05g00225 | 327288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme05g00225 | 311 | SUPERFAMILY | Cyclin-like | 148 | 281 | IPR036915 | - | |
| Cme05g00225 | 311 | ProSitePatterns | Cyclins signature. | 188 | 219 | IPR006671 | - | |
| Cme05g00225 | 311 | PANTHER | CYCLINS | 22 | 301 | IPR039361 | - | |
| Cme05g00225 | 311 | CDD | CYCLIN | 187 | 276 | IPR013763 | - | |
| Cme05g00225 | 311 | PIRSF | Cyclin_A_B_D_E | 69 | 309 | IPR039361 | - | |
| Cme05g00225 | 311 | PIRSF | Cyclin_A_B_D_E | 2 | 99 | IPR039361 | - | |
| Cme05g00225 | 311 | Gene3D | - | 173 | 284 | - | - | |
| Cme05g00225 | 311 | Pfam | Cyclin, N-terminal domain | 159 | 283 | IPR006671 | - | |
| Cme05g00225 | 311 | SMART | cyclin_7 | 193 | 277 | IPR013763 | - | |
| Cme05g00225 | 311 | PANTHER | CYCLIN-B1-4 | 22 | 301 | - | - | |
| Cme05g00225 | 311 | Gene3D | - | 170 | 303 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme05g00225 | Cme-Chr5:1579347 | Cme08g01425 | Cme-Chr8:12648898 | 9.61E-98 | dispersed | |
| Cme05g00225 | Cme-Chr5:1579347 | Cme04g00381 | Cme-Chr4:3058212 | 1.50E-38 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme05g00225 | K21777 | - | csv:101222873 | 570.466 |