Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00231 ATGGGGGATATTAGAAAATGGTTCATGAAAGCACACGACAAAGACAACGGCAGTGGGTCAAAGAAAGCAAAACCTGCTCCAAGCAGCTTAGAGAAATCCATTTCAGCTGAACTACAGTCCGGAAAAACAGGGCCAAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAGAAGCAGAAGGCCAAGGATACAGAAGAAACAGAGGTACCCCCGATCATAGGAAAGTCCCCACAGGATACTAAGGAATCACCAGCCAAAAGAAAGTTTCAAAAGTATAATGGGGAATCACCGAAAGCTTCACCTCTAAAAAAATCAAACAAAATTGATGACGACGATGATGATGCTGTTCTTTGTAGTTCTAAAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTGTTGAAATGGAAGCGAGTGATGATGAGGAAACCAAGGGCACCGATTCTTCTCTAAAGCCAAGTGGAAGGGGTAGGGGTGGAAGAGGTTTGTCTGCTGCAACCATTGGTGGTAGAGGCAGAGGTGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGGGAAAAGGAAGTCCCTGAAGGTGCTCCGGACTGTTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTCTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCGTCAAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTGTTTGACATGATCCGTGCATCTGGCAAAAAAGCTCCTCCTAGGCAAGATCCTAAAAAATCTATGGTTAAATCTGAGGAATCTCCGACGGAGAAAAAATTCCAGAAAGTACAAGCAAAATCCCACAAAGATTTGACTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAGTTCTCTAACCTAACATGGACAGAAAAATATAGGCCCAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGGCCAGTGATTCTGGTGCGAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAATGCCAGCGACAATAGGGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTTCATTTCAAAATGGATCAGCCAAAACATCACAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAGATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTATTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAATATGATGATATTCGGCAACGGCTTCTGAGCAGTAGGAAAGATGAAGACATCTCACCCTTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATTGATCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGTGGTGTTAGCAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCCCGTGCAGCTGAATCAATTGCAGATGGTGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTTTCTCAAAGTAGTTGTATTGCTTCTTGTATAATCCCAGCTTCGTTATTGCATGGGCAAAGAGAAACGCTTGAGCAGTTTGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAGAATTCCACATTTGGAAAAAATATGAGACTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAATCCTGTTCAGGGAGGGAACACCTACGAGTTGAGAACCTTACTCTGTTTCTAAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAGGCTGTTAAAACAGTGGTTGAATTTATGAGCCTATACTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCACTAGATGGAGTTGCCCCCGCAGTCAAAGCTGCTCTAACCAAGGCATACAAAGAAGCAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCCAAGAAGCGAATTGCAGCAATTCTAGAACCTACTGAGGATACTGTTGAAGGTGCTGGGGGAGAGACATTGGTGGAAAGTGATGATGAAAACTCTGTGGACAATGAGGGCGAAGAAAACTCCACAAATGGTGAGAAGCTGCAATTAGAACTTCAAAGCTTGAACAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAGATTCAAGCGCCAAGAAATCCGGTGGCAGAGGAAGAGGAGGTAGAACTTCCCAGGCTTCAGAGAAGAAAAGTGGTCGAGGTTCAGGATCTGCCACAAAGAGGAAAAGATGA 2922 42.68 MGDIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSISAELQSGKTGPSGGESTGRRITSKYFASEKQKAKDTEETEVPPIIGKSPQDTKESPAKRKFQKYNGESPKASPLKKSNKIDDDDDDAVLCSSKKNMSEVTPNKKLKSGSGKGITQKPVEMEASDDEETKGTDSSLKPSGRGRGGRGLSAATIGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGKKAPPRQDPKKSMVKSEESPTEKKFQKVQAKSHKDLTAGASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMDQPKHHKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSRKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSGVSKDDNGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCIASCIIPASLLHGQRETLEQFERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKTVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEASKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDTVEGAGGETLVESDDENSVDNEGEENSTNGEKLQLELQSLNKKGMQVQLDLKGVEDSSAKKSGGRGRGGRTSQASEKKSGRGSGSATKRKR 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1632282 1644828 - MELO3C014528.2.1 Cme05g00231 327294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00231 973 SUPERFAMILY BRCT domain 219 298 IPR036420 -
Cme05g00231 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 604 IPR027417 -
Cme05g00231 973 MobiDBLite consensus disorder prediction 1 220 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 127 143 - -
Cme05g00231 973 Pfam BRCA1 C Terminus (BRCT) domain 221 296 IPR001357 -
Cme05g00231 973 Gene3D - 616 728 - -
Cme05g00231 973 SMART BRCT_7 221 299 IPR001357 -
Cme05g00231 973 PANTHER REPLICATION FACTOR C SUBUNIT 1 15 944 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 203 218 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 32 58 - -
Cme05g00231 973 SUPERFAMILY post-AAA+ oligomerization domain-like 615 760 IPR008921 GO:0003677|GO:0006260
Cme05g00231 973 MobiDBLite consensus disorder prediction 910 927 - -
Cme05g00231 973 SMART AAA_5 407 545 IPR003593 -
Cme05g00231 973 CDD BRCT_RFC1 219 297 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 1 20 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 301 331 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 59 75 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 880 973 - -
Cme05g00231 973 PIRSF RFC1 1 947 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Cme05g00231 973 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 15 944 - -
Cme05g00231 973 Gene3D BRCT domain 196 298 IPR036420 -
Cme05g00231 973 Gene3D - 355 543 IPR027417 -
Cme05g00231 973 Pfam Replication factor RFC1 C terminal domain 684 846 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cme05g00231 973 MobiDBLite consensus disorder prediction 108 125 - -
Cme05g00231 973 Pfam ATPase family associated with various cellular activities (AAA) 411 523 IPR003959 GO:0005524|GO:0016887
Cme05g00231 973 Gene3D - 544 614 - -
Cme05g00231 973 CDD AAA 396 544 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 152 167 - -
Cme05g00231 973 ProSiteProfiles BRCT domain profile. 219 297 IPR001357 -
Cme05g00231 973 CDD HLD_clamp_RFC 544 602 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 299 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00231 Cme-Chr5:1632282 Cme06g00397 Cme-Chr6:2531062 4.46E-16 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00231 K10754 - csv:101204361 1748.79