Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00231 ATGGGGGATATTAGAAAATGGTTCATGAAAGCACACGACAAAGACAACGGCAGTGGGTCAAAGAAAGCAAAACCTGCTCCAAGCAGCTTAGAGAAATCCATTTCAGCTGAACTACAGTCCGGAAAAACAGGGCCAAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAGAAGCAGAAGGCCAAGGATACAGAAGAAACAGAGGTACCCCCGATCATAGGAAAGTCCCCACAGGATACTAAGGAATCACCAGCCAAAAGAAAGTTTCAAAAGTATAATGGGGAATCACCGAAAGCTTCACCTCTAAAAAAATCAAACAAAATTGATGACGACGATGATGATGCTGTTCTTTGTAGTTCTAAAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTGTTGAAATGGAAGCGAGTGATGATGAGGAAACCAAGGGCACCGATTCTTCTCTAAAGCCAAGTGGAAGGGGTAGGGGTGGAAGAGGTTTGTCTGCTGCAACCATTGGTGGTAGAGGCAGAGGTGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGGGAAAAGGAAGTCCCTGAAGGTGCTCCGGACTGTTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTCTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCGTCAAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTGTTTGACATGATCCGTGCATCTGGCAAAAAAGCTCCTCCTAGGCAAGATCCTAAAAAATCTATGGTTAAATCTGAGGAATCTCCGACGGAGAAAAAATTCCAGAAAGTACAAGCAAAATCCCACAAAGATTTGACTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAGTTCTCTAACCTAACATGGACAGAAAAATATAGGCCCAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGGCCAGTGATTCTGGTGCGAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAATGCCAGCGACAATAGGGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTTCATTTCAAAATGGATCAGCCAAAACATCACAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAGATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTATTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAATATGATGATATTCGGCAACGGCTTCTGAGCAGTAGGAAAGATGAAGACATCTCACCCTTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATTGATCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGTGGTGTTAGCAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCCCGTGCAGCTGAATCAATTGCAGATGGTGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTTTCTCAAAGTAGTTGTATTGCTTCTTGTATAATCCCAGCTTCGTTATTGCATGGGCAAAGAGAAACGCTTGAGCAGTTTGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAGAATTCCACATTTGGAAAAAATATGAGACTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAATCCTGTTCAGGGAGGGAACACCTACGAGTTGAGAACCTTACTCTGTTTCTAAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAGGCTGTTAAAACAGTGGTTGAATTTATGAGCCTATACTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCACTAGATGGAGTTGCCCCCGCAGTCAAAGCTGCTCTAACCAAGGCATACAAAGAAGCAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCCAAGAAGCGAATTGCAGCAATTCTAGAACCTACTGAGGATACTGTTGAAGGTGCTGGGGGAGAGACATTGGTGGAAAGTGATGATGAAAACTCTGTGGACAATGAGGGCGAAGAAAACTCCACAAATGGTGAGAAGCTGCAATTAGAACTTCAAAGCTTGAACAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAGATTCAAGCGCCAAGAAATCCGGTGGCAGAGGAAGAGGAGGTAGAACTTCCCAGGCTTCAGAGAAGAAAAGTGGTCGAGGTTCAGGATCTGCCACAAAGAGGAAAAGATGA 2922 42.68 MGDIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSISAELQSGKTGPSGGESTGRRITSKYFASEKQKAKDTEETEVPPIIGKSPQDTKESPAKRKFQKYNGESPKASPLKKSNKIDDDDDDAVLCSSKKNMSEVTPNKKLKSGSGKGITQKPVEMEASDDEETKGTDSSLKPSGRGRGGRGLSAATIGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGKKAPPRQDPKKSMVKSEESPTEKKFQKVQAKSHKDLTAGASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMDQPKHHKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSRKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSGVSKDDNGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCIASCIIPASLLHGQRETLEQFERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKTVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEASKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDTVEGAGGETLVESDDENSVDNEGEENSTNGEKLQLELQSLNKKGMQVQLDLKGVEDSSAKKSGGRGRGGRTSQASEKKSGRGSGSATKRKR 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1632282 1644828 - MELO3C014528.2.1 Cme05g00231 327294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00231 973 SUPERFAMILY BRCT domain 219 298 IPR036420 -
Cme05g00231 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 604 IPR027417 -
Cme05g00231 973 MobiDBLite consensus disorder prediction 1 220 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 127 143 - -
Cme05g00231 973 Pfam BRCA1 C Terminus (BRCT) domain 221 296 IPR001357 -
Cme05g00231 973 Gene3D - 616 728 - -
Cme05g00231 973 SMART BRCT_7 221 299 IPR001357 -
Cme05g00231 973 PANTHER REPLICATION FACTOR C SUBUNIT 1 15 944 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 203 218 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 32 58 - -
Cme05g00231 973 SUPERFAMILY post-AAA+ oligomerization domain-like 615 760 IPR008921 GO:0003677|GO:0006260
Cme05g00231 973 MobiDBLite consensus disorder prediction 910 927 - -
Cme05g00231 973 SMART AAA_5 407 545 IPR003593 -
Cme05g00231 973 CDD BRCT_RFC1 219 297 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 1 20 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 301 331 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 59 75 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 880 973 - -
Cme05g00231 973 PIRSF RFC1 1 947 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Cme05g00231 973 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 15 944 - -
Cme05g00231 973 Gene3D BRCT domain 196 298 IPR036420 -
Cme05g00231 973 Gene3D - 355 543 IPR027417 -
Cme05g00231 973 Pfam Replication factor RFC1 C terminal domain 684 846 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cme05g00231 973 MobiDBLite consensus disorder prediction 108 125 - -
Cme05g00231 973 Pfam ATPase family associated with various cellular activities (AAA) 411 523 IPR003959 GO:0005524|GO:0016887
Cme05g00231 973 Gene3D - 544 614 - -
Cme05g00231 973 CDD AAA 396 544 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 152 167 - -
Cme05g00231 973 ProSiteProfiles BRCT domain profile. 219 297 IPR001357 -
Cme05g00231 973 CDD HLD_clamp_RFC 544 602 - -
Cme05g00231 973 MobiDBLite consensus disorder prediction 299 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00231 K10754 RFC1; replication factor C subunit 1 - csv:101204361 1748.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00231 Cme-Chr5:1632282 Cme06g00397 Cme-Chr6:2531062 4.46E-16 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00231 Cme_Chr05 FPKM 1.740093 1.917894 2.550206 1.721443 30.914154 22.233501 28.7631 0.571939 0.983348 0.815694