Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00232 ATGTCACTGGACATGATGGCTTCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACATTGGTGACTGTGAGATGTGGCCATTGTTCAAATCTGCTTTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCTCAACAGGGTCACAAACAACAGCAGGTGAATGCTGGGGATTCGAGTAAGGACAGAGCTTCTTCTTCTTCTTCTGCTAAATCCACCAAAATTGGTTCTCTTGATTCTTCGGCAGAACGTGACCAACATAGAATCCCTCCTATTCGCCAGAAAAGACAGCGTGTTCCATCGGCTTATAATAGGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATAAGCCATAGAGAAGCCTTCAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAATTGGATGGAAATAATAAGCAAACAAAATAA 519 42.0 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSAKSTKIGSLDSSAERDQHRIPPIRQKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNNKQTK 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1654360 1667286 + MELO3C014527.2.1 Cme05g00232 327295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00232 172 MobiDBLite consensus disorder prediction 58 95 - -
Cme05g00232 172 MobiDBLite consensus disorder prediction 58 121 - -
Cme05g00232 172 CDD HMGB-UBF_HMG-box 116 152 - -
Cme05g00232 172 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 171 - -
Cme05g00232 172 Pfam YABBY protein 7 162 IPR006780 GO:0007275
Cme05g00232 172 Gene3D High mobility group box domain 110 159 IPR036910 -
Cme05g00232 172 MobiDBLite consensus disorder prediction 96 110 - -
Cme05g00232 172 PANTHER PROTEIN YABBY 6-RELATED 6 171 IPR006780 GO:0007275
Cme05g00232 172 SUPERFAMILY HMG-box 111 155 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01193 Cme-Chr2:17177531 Cme05g00232 Cme-Chr5:1654360 2.89E-31 dispersed
Cme05g00232 Cme-Chr5:1654360 Cme10g00349 Cme-Chr10:2260905 3.40E-36 dispersed
Cme05g00232 Cme-Chr5:1654360 Cme05g01908 Cme-Chr5:27768209 5.80E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41315 PF04690 YABBY 1.10E-70 CL0114 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00232 K25796 - csv:101222154 320.857