Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00232 ATGTCACTGGACATGATGGCTTCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACATTGGTGACTGTGAGATGTGGCCATTGTTCAAATCTGCTTTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCTCAACAGGGTCACAAACAACAGCAGGTGAATGCTGGGGATTCGAGTAAGGACAGAGCTTCTTCTTCTTCTTCTGCTAAATCCACCAAAATTGGTTCTCTTGATTCTTCGGCAGAACGTGACCAACATAGAATCCCTCCTATTCGCCAGAAAAGACAGCGTGTTCCATCGGCTTATAATAGGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATAAGCCATAGAGAAGCCTTCAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAATTGGATGGAAATAATAAGCAAACAAAATAA 519 42.0 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSAKSTKIGSLDSSAERDQHRIPPIRQKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNNKQTK 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1654360 1667286 + MELO3C014527.2.1 Cme05g00232 327295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00232 172 MobiDBLite consensus disorder prediction 58 95 - -
Cme05g00232 172 MobiDBLite consensus disorder prediction 58 121 - -
Cme05g00232 172 CDD HMGB-UBF_HMG-box 116 152 - -
Cme05g00232 172 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 171 - -
Cme05g00232 172 Pfam YABBY protein 7 162 IPR006780 GO:0007275
Cme05g00232 172 Gene3D High mobility group box domain 110 159 IPR036910 -
Cme05g00232 172 MobiDBLite consensus disorder prediction 96 110 - -
Cme05g00232 172 PANTHER PROTEIN YABBY 6-RELATED 6 171 IPR006780 GO:0007275
Cme05g00232 172 SUPERFAMILY HMG-box 111 155 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00232 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101222154 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01193 Cme-Chr2:17177531 Cme05g00232 Cme-Chr5:1654360 2.89E-31 dispersed
Cme05g00232 Cme-Chr5:1654360 Cme10g00349 Cme-Chr10:2260905 3.40E-36 dispersed
Cme05g00232 Cme-Chr5:1654360 Cme05g01908 Cme-Chr5:27768209 5.80E-68 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00349 . 60 240 C2C2-YABBY Transcription Factor Family AT1G69180 53.5 1.3e-44 176.4
Cme05g00232 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 2.7e-53 205.3
Cme05g01908 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 71.7 2.4e-61 231.9
Cme05g00232 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 58.9 2.2e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41315 PF04690 YABBY 1.10E-70 CL0114 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00232 Cme_Chr05 FPKM 14.819403 16.052235 16.600752 16.95112 17.509592 17.654518 17.970608 19.949337 17.692034 18.298903