Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme05g00240 | ATGAAAATGGAAGATCAATTAGAAGAAAATGGTGGAATTGAAGTCCCTTCCTATTTCCTTTGTCCAATTTCTCTTCAACTTATGAGAGATCCAGTCACAATATCCACCGGCATCACTTACGATCGTTCGAGCATTGAAAAGTGGCTGTTTTCATTCAACAAAACTGTTTGTCCCATTACTAAACAACCCTTATCATCCGATCCTGATTTACTCACCCCGAATCATACTCTTCGTCGTTTGATTCAATCTTGGTGTACACTCAATGCTTCTAATGGAATTGAAAGAATTCCAACTCCAAAATCTCCTATTGACAAAACCCATATCGCCAAAATCCTTAAACAAGCTCAAAATTTCCCTAATTCCAACCATAAATGTCTCCTTGCTCTTAAAGCTATTGCCTTGGAGAATGAGAGAAATCGCAATCTTGTGGCTCAATCCGATGGGGCTTTCGATTTTCTAGCTATGGTTATCAAGAGTGGTGGTAGTAATAATATTGCCTCTATTGAGTTAGCTGTGGAGATTCTCTTTCATATCAAATCATCTCAAGCCCATCTCAAGAATCTCGTAAATGGTGATGTTGATTTTATTAATTCTCTTACTTTTGTTCTGCAAAATGGGAATTGTCAATCTAGAGCTTATGCGGTAATGTTGCTTAAATCAAGCTTGGAACTTGCCGATCCAATTCGTTTGATGAGTATTGAGAGGGAACTTCTAAGAGAAACTGTGCGTGTGATTCATGATCATATTTCTCATCAAGCGTCGAAATCGGCGTTGAAGGTTCTTGCTGAGGTTTGTCCGTGGGGGAGGAATCGTGTGAAGGCAGTCGAGGGAGGTGCAGTCGGGGTTTTAGTGGAGTTGCTTTTGAATTCGACCGAGAGGCGGTGGTCGGAGTTAGGATTAGTGGTTCTGGATCAGCTTTGCGGGTGCGCGGAGGGGCGGGAGAAGCTCGTGGAACATGCGGCGGGGCTTGCGGTTGTGTCTAAGAAAATACTTAGGGTTTCGGCCATGGCGAGTGATCGAGCAGTGAGGATATTGTCATCGATTTGTCGGTTTTCGGCGTCCGCGAAAGTGTTGCAAGAAATGTTGGAGGTTGGGGTGGTGGCAAAGCTGTGTTTAGTTTTGCAAATGGATTGTAGTTTGAAGACAAGGGAGAAGGCAAGAGATACACTAAAGTTGCATTCTAGGGTTTGGAGTAATTCCTCTTGTATTCCTCCACATTTGTTGTCTGCTTATCCATCCACTTGA | 1245 | 42.81 | MKMEDQLEENGGIEVPSYFLCPISLQLMRDPVTISTGITYDRSSIEKWLFSFNKTVCPITKQPLSSDPDLLTPNHTLRRLIQSWCTLNASNGIERIPTPKSPIDKTHIAKILKQAQNFPNSNHKCLLALKAIALENERNRNLVAQSDGAFDFLAMVIKSGGSNNIASIELAVEILFHIKSSQAHLKNLVNGDVDFINSLTFVLQNGNCQSRAYAVMLLKSSLELADPIRLMSIERELLRETVRVIHDHISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSTERRWSELGLVVLDQLCGCAEGREKLVEHAAGLAVVSKKILRVSAMASDRAVRILSSICRFSASAKVLQEMLEVGVVAKLCLVLQMDCSLKTREKARDTLKLHSRVWSNSSCIPPHLLSAYPST | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1752969 | 1754238 | + | MELO3C014520.2.1 | Cme05g00240 | 327303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme05g00240 | 414 | ProSiteProfiles | U-box domain profile. | 14 | 91 | IPR003613 | GO:0004842|GO:0016567 | |
| Cme05g00240 | 414 | SUPERFAMILY | ARM repeat | 122 | 386 | IPR016024 | - | |
| Cme05g00240 | 414 | Pfam | U-box domain | 15 | 86 | IPR003613 | GO:0004842|GO:0016567 | |
| Cme05g00240 | 414 | CDD | RING-Ubox_PUB | 19 | 62 | IPR045210 | - | |
| Cme05g00240 | 414 | PANTHER | WDSAM1 PROTEIN | 14 | 412 | IPR045185 | GO:0061630 | |
| Cme05g00240 | 414 | SMART | Ubox_2 | 18 | 84 | IPR003613 | GO:0004842|GO:0016567 | |
| Cme05g00240 | 414 | Gene3D | - | 106 | 400 | IPR011989 | - | |
| Cme05g00240 | 414 | SUPERFAMILY | RING/U-box | 11 | 88 | - | - | |
| Cme05g00240 | 414 | PANTHER | OS11G0573500 PROTEIN | 14 | 412 | - | - | |
| Cme05g00240 | 414 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 95 | IPR013083 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme02g00821 | Cme05g00240 | CCT | |
| Cme02g00821 | Cme05g00240 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme02g00821 | Cme-Chr2:10648510 | Cme05g00240 | Cme-Chr5:1752969 | 6.04E-96 | dispersed | |
| Cme02g00829 | Cme-Chr2:10816684 | Cme05g00240 | Cme-Chr5:1752969 | 3.38E-104 | dispersed | |
| Cme05g00240 | Cme-Chr5:1752969 | Cme08g02024 | Cme-Chr8:25461875 | 9.43E-128 | dispersed | |
| Cme11g02480 | Cme-Chr11:31437326 | Cme05g00240 | Cme-Chr5:1752969 | 2.53E-24 | dispersed | |
| Cme08g01071 | Cme-Chr8:7018231 | Cme05g00240 | Cme-Chr5:1752969 | 1.70E-41 | transposed | |
| Cme11g00047 | Cme-Chr11:406845 | Cme05g00240 | Cme-Chr5:1752969 | 1.68E-35 | transposed | |
| Cme04g02322 | Cme-Chr4:30163072 | Cme05g00240 | Cme-Chr5:1752969 | 6.73E-138 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme05g00240 | - | - | csv:101203877 | 785.793 |