Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00241 ATGGCGACGTACTTCCACGGTGGTTCAGAAATCCAAACCAATTCTGACGGAATTCACACTCTTTACCTTATGAACCCAAATTACGTACCTTACTCTGACACCCACTCCCAATCTTCTCATAATATGCTTTTTCTTAACCCTTCATCAACACACGCGCTTAACCCTTCCACCCTCCCTCACGCCCCGCCTTCCAACAACCACTTCGTCGGAATTCCTCTCCCCACCACCGACTCTTCCCGTCCTTCCTTCCACGAAATCTCAACCCTCCATCCTCATCGCCTCCACTACAATCTATGGGCTCCTGTGGACCAACAACAGCAACAGCAACAATCTCTCCATGCCGACTCCGCCGATTTGACCTTCCGTCGCCCGACCGCCCAACAGGGTTTGTCCTTAAGCCTCTCTTCCCAACAGTCTTTATACAGGACGTTATCGGCTGAGCAGGAGATACAAGGCGGCGGCGGCGGTGGTGCTCCGAGTGGGGAGGAAATTCGGGTGTCAGGGAATTCTGGGACGTCGGTGTCGGTGGTTTCGAGTAGCATAACGGGGGTTCAGAGTGTGATATTGGGGTCTAAGTATTTGAAAGCGGCTCAAGAACTTTTGGACGAAGTGGTTCATGTTGGTAAAGCAAATTATAAAACCGACAAATTTGGGGATGGGACAAAGGATAATAAGATGAAGATGAAGAAAGAATCAACGGCTACTATTGGTGGAGGTTCTTCCGCCGCCACCGGTGGCGGTGAAACTACTTCCAAGTCTGTTGCTGAGCTTAGTACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTTATTGGCATGCTTGATGAGGTGGAGCAGAAGTACAGACAATACCACCAACAAATGCGAGGGGTAGTGAGTTGTTTTGAGCAAGCAGCAGGTTTGGGGTCAGCGAAGTCCTACGCATCACTGGCACTCGAAACGATTTCGAAGCAGTTTAGGTGCCTAAAAGATGCAATATGTGGACAAATAAAAGCAACAGGAAAAAGCTTAGGAGAAGATCAAGAGAATTGGTTGGGTTCATCAAAAATGGAAGGATCATCAACAACATCATCATCAAGATTGAGATATGTTGATCATCATTTAAGGCAACAAAGAGCTCTTCAACAATTGGGAATGATTCAACATAATACTTGGAGACCTCAAAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACATTTCCTTCACCCGTATCCTAAAGATTCTGATAAGATTATTCTTGCTAAACAAACTGGTCTCACAAGAAGCCAAGTATCGAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAGGAAATGTATTTGGAGGAAATCAAAGAGCAAGAACAAAATGGGAATTCCCAAGACATGATAAGAGGAGGAGGATCAGATCATCATCATCATCAAAATAACAACAATAATCATACTCATAATGATCCACAATATTCCAAGACAGAAAATTTGATGAACAACAACCCATCCCATTCTTCAATCTCATCCTCCTCAATCTTAGGAATAGGATCAACAACCGCGAGTGGCGGTTTCAACCTCGTACCACCGTCCTCTGACAATAACATCCTCCTCTCAACTCCCAAAAAACCAAGAACCAACACTATCACCACCGCCGTCACGACGACAAACAACAACGCTGTCGTCCCAGAAAACCCATCCTCAGAATCCATGCTTCTAAGAGACATTGATATTGTTAATTCCAACACATACCCAGTTGGTGAAATAGGATCAACCTTCAATTCTGAGCTTTTAACTCCAAGATTTCATGCAAATGGTGTCTCTCTCACTCTTGCTCTTCCTCATAATAATTCAGATCATCTCTCTCTTTCACCCAACCAAACAAATTACCATCATCTCTCATCCAACCAAAACCTTCACTTGGGTAGATCATCAAGGCTTGATATCACCAATCATCATCCTGGACCACCCGATTTCTCCGACGTCAATCCCGCTGCCCCGCCCGCCTACGACCATGTCGATATGCAAACCACCAAAAGGTTCGCCGCCCAATTATTGCCTGATTTTGTTGCATGA 2082 45.2 MATYFHGGSEIQTNSDGIHTLYLMNPNYVPYSDTHSQSSHNMLFLNPSSTHALNPSTLPHAPPSNNHFVGIPLPTTDSSRPSFHEISTLHPHRLHYNLWAPVDQQQQQQQSLHADSADLTFRRPTAQQGLSLSLSSQQSLYRTLSAEQEIQGGGGGGAPSGEEIRVSGNSGTSVSVVSSSITGVQSVILGSKYLKAAQELLDEVVHVGKANYKTDKFGDGTKDNKMKMKKESTATIGGGSSAATGGGETTSKSVAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMRGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICGQIKATGKSLGEDQENWLGSSKMEGSSTTSSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGNSQDMIRGGGSDHHHHQNNNNNHTHNDPQYSKTENLMNNNPSHSSISSSSILGIGSTTASGGFNLVPPSSDNNILLSTPKKPRTNTITTAVTTTNNNAVVPENPSSESMLLRDIDIVNSNTYPVGEIGSTFNSELLTPRFHANGVSLTLALPHNNSDHLSLSPNQTNYHHLSSNQNLHLGRSSRLDITNHHPGPPDFSDVNPAAPPAYDHVDMQTTKRFAAQLLPDFVA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1763777 1767716 - MELO3C014519.2.1 Cme05g00241 327304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00241 693 ProSiteProfiles 'Homeobox' domain profile. 384 447 IPR001356 GO:0003677
Cme05g00241 693 MobiDBLite consensus disorder prediction 234 253 - -
Cme05g00241 693 Pfam Associated with HOX 187 328 IPR006563 -
Cme05g00241 693 MobiDBLite consensus disorder prediction 459 513 - -
Cme05g00241 693 Gene3D - 390 468 - -
Cme05g00241 693 Coils Coil 262 289 - -
Cme05g00241 693 MobiDBLite consensus disorder prediction 486 513 - -
Cme05g00241 693 Pfam Homeobox KN domain 404 443 IPR008422 GO:0003677|GO:0006355
Cme05g00241 693 MobiDBLite consensus disorder prediction 648 668 - -
Cme05g00241 693 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 644 - -
Cme05g00241 693 MobiDBLite consensus disorder prediction 149 172 - -
Cme05g00241 693 CDD homeodomain 387 448 IPR001356 GO:0003677
Cme05g00241 693 SMART HOX_1 387 451 IPR001356 GO:0003677
Cme05g00241 693 MobiDBLite consensus disorder prediction 229 253 - -
Cme05g00241 693 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 644 - -
Cme05g00241 693 SMART prehox3 182 330 IPR006563 -
Cme05g00241 693 SUPERFAMILY Homeodomain-like 388 453 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00241 Cme-Chr5:1763777 Cme11g00154 Cme-Chr11:1651284 6.26E-94 dispersed
Cme04g02323 Cme-Chr4:30173085 Cme05g00241 Cme-Chr5:1763777 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41316 PF07526 POX 5.50E-46 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00241 - - csv:101220747 1169.07