Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00246 ATGTCGGGTTCTCGACCTCCTAACTCCTCTGGACACCTTCCTGACCAGATCATGCACTCTCTTAAACGCCAACTCCCTTTCTCTTCTGTGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCTCCCGACTCTCGACTCGCCGATCAAGAATCTGATGCTATCGTAGTCAAATCTCCTCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACCGATAGAGCAATTGGTCCTAGATTTGCTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCAGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTTTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACCTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTTATAGAAAAGAAACTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTTGATGACAATTATGCTGATCTACAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGATCTCAGTGAAGATGAGAACAACCAAAGGCAGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTACCTTGTTTCCAGAACGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGCGGAAATGCCCCCAAGCTTGCCGTCAAGCTCAGGATTGAATGAAGCACCTACAACAACAGTAGTAACAGAGGATACTAGGGGAAAGGAAATTGAAACGCGGGAGCAAGACGTACACAGAATGTGCTCCGATCTAAATGCATCACAGGACTTCGTGGGTGGAATTATGAAAATCGTCCCCTCAGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCCGATGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACGTATCCTCACAATTTAA 1275 44.31 MSGSRPPNSSGHLPDQIMHSLKRQLPFSSVKPPFASPGDYHRFAPDSRLADQESDAIVVKSPQLKRKSEVADYEAESTDRAIGPRFAEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYADLQAEVENLTMEERGLDEQIREMQERLRDLSEDENNQRQWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAAEMPPSLPSSSGLNEAPTTTVVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTERILTI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1809326 1815345 + MELO3C014514.2.1 Cme05g00246 327309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00246 424 PANTHER TRANSCRIPTION FACTOR E2F 18 421 IPR015633 GO:0000978|GO:0006357
Cme05g00246 424 PANTHER TRANSCRIPTION FACTOR E2FB 18 421 - -
Cme05g00246 424 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cme05g00246 424 Pfam E2F transcription factor CC-MB domain 221 322 IPR032198 GO:0046983
Cme05g00246 424 MobiDBLite consensus disorder prediction 337 357 - -
Cme05g00246 424 SUPERFAMILY E2F-DP heterodimerization region 217 323 IPR037241 -
Cme05g00246 424 Coils Coil 218 255 - -
Cme05g00246 424 Gene3D - 212 323 - -
Cme05g00246 424 MobiDBLite consensus disorder prediction 28 47 - -
Cme05g00246 424 CDD E2F_DD 216 323 IPR032198 GO:0046983
Cme05g00246 424 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cme05g00246 424 Gene3D - 134 207 IPR036388 -
Cme05g00246 424 MobiDBLite consensus disorder prediction 337 359 - -
Cme05g00246 424 Coils Coil 156 176 - -
Cme05g00246 424 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cme05g00246 424 MobiDBLite consensus disorder prediction 94 135 - -
Cme05g00246 424 MobiDBLite consensus disorder prediction 109 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01934 Cme-Chr2:25687566 Cme05g00246 Cme-Chr5:1809326 9.12E-11 dispersed
Cme03g01889 Cme-Chr3:27035350 Cme05g00246 Cme-Chr5:1809326 1.88E-71 dispersed
Cme05g00246 Cme-Chr5:1809326 Cme08g01161 Cme-Chr8:8203952 5.48E-162 dispersed
Cme05g00246 Cme-Chr5:1809326 Cme12g01722 Cme-Chr12:24006819 7.89E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41317 PF16421 E2F_CC-MB 4.00E-35 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00246 K06620 - csv:101219318 819.305