Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00246 ATGTCGGGTTCTCGACCTCCTAACTCCTCTGGACACCTTCCTGACCAGATCATGCACTCTCTTAAACGCCAACTCCCTTTCTCTTCTGTGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCTCCCGACTCTCGACTCGCCGATCAAGAATCTGATGCTATCGTAGTCAAATCTCCTCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACCGATAGAGCAATTGGTCCTAGATTTGCTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCAGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTTTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACCTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTTATAGAAAAGAAACTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTTGATGACAATTATGCTGATCTACAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGATCTCAGTGAAGATGAGAACAACCAAAGGCAGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTACCTTGTTTCCAGAACGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGCGGAAATGCCCCCAAGCTTGCCGTCAAGCTCAGGATTGAATGAAGCACCTACAACAACAGTAGTAACAGAGGATACTAGGGGAAAGGAAATTGAAACGCGGGAGCAAGACGTACACAGAATGTGCTCCGATCTAAATGCATCACAGGACTTCGTGGGTGGAATTATGAAAATCGTCCCCTCAGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCCGATGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACGTATCCTCACAATTTAA 1275 44.31 MSGSRPPNSSGHLPDQIMHSLKRQLPFSSVKPPFASPGDYHRFAPDSRLADQESDAIVVKSPQLKRKSEVADYEAESTDRAIGPRFAEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYADLQAEVENLTMEERGLDEQIREMQERLRDLSEDENNQRQWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAAEMPPSLPSSSGLNEAPTTTVVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTERILTI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1809326 1815345 + MELO3C014514.2.1 Cme05g00246 327309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00246 424 PANTHER TRANSCRIPTION FACTOR E2F 18 421 IPR015633 GO:0000978|GO:0006357
Cme05g00246 424 PANTHER TRANSCRIPTION FACTOR E2FB 18 421 - -
Cme05g00246 424 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cme05g00246 424 Pfam E2F transcription factor CC-MB domain 221 322 IPR032198 GO:0046983
Cme05g00246 424 MobiDBLite consensus disorder prediction 337 357 - -
Cme05g00246 424 SUPERFAMILY E2F-DP heterodimerization region 217 323 IPR037241 -
Cme05g00246 424 Coils Coil 218 255 - -
Cme05g00246 424 Gene3D - 212 323 - -
Cme05g00246 424 MobiDBLite consensus disorder prediction 28 47 - -
Cme05g00246 424 CDD E2F_DD 216 323 IPR032198 GO:0046983
Cme05g00246 424 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cme05g00246 424 Gene3D - 134 207 IPR036388 -
Cme05g00246 424 MobiDBLite consensus disorder prediction 337 359 - -
Cme05g00246 424 Coils Coil 156 176 - -
Cme05g00246 424 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cme05g00246 424 MobiDBLite consensus disorder prediction 94 135 - -
Cme05g00246 424 MobiDBLite consensus disorder prediction 109 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00246 K06620 E2F3; transcription factor E2F3 - csv:101219318 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01934 Cme-Chr2:25687566 Cme05g00246 Cme-Chr5:1809326 9.12E-11 dispersed
Cme03g01889 Cme-Chr3:27035350 Cme05g00246 Cme-Chr5:1809326 1.88E-71 dispersed
Cme05g00246 Cme-Chr5:1809326 Cme08g01161 Cme-Chr8:8203952 5.48E-162 dispersed
Cme05g00246 Cme-Chr5:1809326 Cme12g01722 Cme-Chr12:24006819 7.89E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41317 PF16421 E2F_CC-MB 4.00E-35 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00246 Cme_Chr05 FPKM 3.698925 0.0 2.413098 0.0 0.0 0.0 4.182149 2.142782 1.795771 2.808753