Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g00263 | ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTTGAGAAGATCGGCTCTAGCATCCGTAAATCTCGAAATGGACTGTTCTCTAAGCAGTCACTCCGGGCTCTGCCTCCGGTTGCGAAGGAAGATGGGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATTGGATGTGGTGCTTTTGGTCGAGTTTATATGGGAATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCTGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGTTGGAGGAAGAAGTGAGGCTTTTGAAGAACCTTTCTCATCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTATTAGGGAAATTTGGGTCATTTCCTGAGTCTGTTATAAAGACCTACACGAAGCAGCTATTATTGGGGCTTGAGTACCTTCACAAAAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCTACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACTAAGTCCCATCCGCCCATTCCTGAGCATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTACCAAGAACCTATTGCATCAGTCCGTGCCTCTTCTATGGAATCTGGGAAACAAATGGCTGATTCTAGGCTGAACTCTAATGATCTGAAAAAGTCTACAATCCTACGTTCAACCTGTGAGGGACTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACGGTCCAACTGGGGTTCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGCTAGTTCATCAATGAAGTACAATTCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGTTCAGAGTTGGGAGGCAATCTGATGGAATTGTCCAGCGTCCAAACTGTCAAGGGGAATGACTCCACTTCTCCATGTGGTCAGTCAGCAGCTGAGGATGACGAAGAGGTTACTGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAACTGAAGAAGCTCCAAACACCTTTATACGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCCATAGGAGGAACAGTTGGAGTTGAGAATATCAAGAGTGTGTCTAATTTTTTGAAATTGCCTCCCAAATGTGGATCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAGTTGATGTTGGTAACTATTCTAGCCGTCAGAGCCGTATAAAACAAGCTAGTATATTGCAAGATCGAGCTCTGCAGGAAATCCAGTCACCTCAACTTGGGGAATGGAACAAATTACTTCAAAACCAGCCAGACTCTTCCACACTAAGTTTCTCTGAAAGACAAAGGAAATGGAAAGAGGAACTTGAGGAAGAACTTAAAAGGAAACGAGAAATGATGCGGAGAGGAATTGTAGGAGCAATTCACTAG | 1914 | 43.57 | MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDGPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPIASVRASSMESGKQMADSRLNSNDLKKSTILRSTCEGLKDICEMGSLRCSSVFSGNYGSRSNWGSSNFEDDMCQIDDKDLFASSSMKYNSIISSNDLNKSFNPMCEPTDDLDESSELGGNLMELSSVQTVKGNDSTSPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANAIGGTVGVENIKSVSNFLKLPPKCGSPSKLRGKRLSSVDVGNYSSRQSRIKQASILQDRALQEIQSPQLGEWNKLLQNQPDSSTLSFSERQRKWKEELEEELKRKREMMRRGIVGAIH | 637 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1916073 | 1921364 | + | MELO3C014496.2.1 | Cme05g00263 | 327326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g00263 | 637 | CDD | STKc_MAPKKK | 65 | 327 | - | - | |
Cme05g00263 | 637 | Pfam | Protein kinase domain | 66 | 327 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g00263 | 637 | ProSitePatterns | Protein kinases ATP-binding region signature. | 71 | 94 | IPR017441 | GO:0005524 | |
Cme05g00263 | 637 | ProSiteProfiles | Protein kinase domain profile. | 65 | 327 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g00263 | 637 | Coils | Coil | 607 | 630 | - | - | |
Cme05g00263 | 637 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g00263 | 637 | PANTHER | MAP KINASE KINASE KINASE | 49 | 545 | - | - | |
Cme05g00263 | 637 | SMART | serkin_6 | 65 | 327 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g00263 | 637 | Gene3D | Transferase(Phosphotransferase) domain 1 | 65 | 367 | - | - | |
Cme05g00263 | 637 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 49 | 545 | - | - | |
Cme05g00263 | 637 | SUPERFAMILY | Protein kinase-like (PK-like) | 65 | 328 | IPR011009 | - | |
Cme05g00263 | 637 | Coils | Coil | 98 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01582 | Cme-Chr4:23117579 | Cme05g00263 | Cme-Chr5:1916073 | 2.39E-55 | dispersed | |
Cme05g00263 | Cme-Chr5:1916073 | Cme05g01657 | Cme-Chr5:25692530 | 0 | dispersed | |
Cme11g00827 | Cme-Chr11:10812050 | Cme05g00263 | Cme-Chr5:1916073 | 2.35E-54 | dispersed | |
Cme05g00263 | Cme-Chr5:1916073 | Cme08g00551 | Cme-Chr8:3459611 | 1.29E-74 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64882 | PF00069 | Pkinase | 4.70E-73 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g00263 | - | K20606 | csv:101217427 | 1238.4 |