Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00263 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTTGAGAAGATCGGCTCTAGCATCCGTAAATCTCGAAATGGACTGTTCTCTAAGCAGTCACTCCGGGCTCTGCCTCCGGTTGCGAAGGAAGATGGGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATTGGATGTGGTGCTTTTGGTCGAGTTTATATGGGAATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCTGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGTTGGAGGAAGAAGTGAGGCTTTTGAAGAACCTTTCTCATCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTATTAGGGAAATTTGGGTCATTTCCTGAGTCTGTTATAAAGACCTACACGAAGCAGCTATTATTGGGGCTTGAGTACCTTCACAAAAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCTACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACTAAGTCCCATCCGCCCATTCCTGAGCATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTACCAAGAACCTATTGCATCAGTCCGTGCCTCTTCTATGGAATCTGGGAAACAAATGGCTGATTCTAGGCTGAACTCTAATGATCTGAAAAAGTCTACAATCCTACGTTCAACCTGTGAGGGACTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACGGTCCAACTGGGGTTCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGCTAGTTCATCAATGAAGTACAATTCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGTTCAGAGTTGGGAGGCAATCTGATGGAATTGTCCAGCGTCCAAACTGTCAAGGGGAATGACTCCACTTCTCCATGTGGTCAGTCAGCAGCTGAGGATGACGAAGAGGTTACTGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAACTGAAGAAGCTCCAAACACCTTTATACGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCCATAGGAGGAACAGTTGGAGTTGAGAATATCAAGAGTGTGTCTAATTTTTTGAAATTGCCTCCCAAATGTGGATCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAGTTGATGTTGGTAACTATTCTAGCCGTCAGAGCCGTATAAAACAAGCTAGTATATTGCAAGATCGAGCTCTGCAGGAAATCCAGTCACCTCAACTTGGGGAATGGAACAAATTACTTCAAAACCAGCCAGACTCTTCCACACTAAGTTTCTCTGAAAGACAAAGGAAATGGAAAGAGGAACTTGAGGAAGAACTTAAAAGGAAACGAGAAATGATGCGGAGAGGAATTGTAGGAGCAATTCACTAG 1914 43.57 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDGPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPIASVRASSMESGKQMADSRLNSNDLKKSTILRSTCEGLKDICEMGSLRCSSVFSGNYGSRSNWGSSNFEDDMCQIDDKDLFASSSMKYNSIISSNDLNKSFNPMCEPTDDLDESSELGGNLMELSSVQTVKGNDSTSPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANAIGGTVGVENIKSVSNFLKLPPKCGSPSKLRGKRLSSVDVGNYSSRQSRIKQASILQDRALQEIQSPQLGEWNKLLQNQPDSSTLSFSERQRKWKEELEEELKRKREMMRRGIVGAIH 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1916073 1921364 + MELO3C014496.2.1 Cme05g00263 327326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00263 637 CDD STKc_MAPKKK 65 327 - -
Cme05g00263 637 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00263 637 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Cme05g00263 637 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00263 637 Coils Coil 607 630 - -
Cme05g00263 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cme05g00263 637 PANTHER MAP KINASE KINASE KINASE 49 545 - -
Cme05g00263 637 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00263 637 Gene3D Transferase(Phosphotransferase) domain 1 65 367 - -
Cme05g00263 637 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 49 545 - -
Cme05g00263 637 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Cme05g00263 637 Coils Coil 98 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01582 Cme-Chr4:23117579 Cme05g00263 Cme-Chr5:1916073 2.39E-55 dispersed
Cme05g00263 Cme-Chr5:1916073 Cme05g01657 Cme-Chr5:25692530 0 dispersed
Cme11g00827 Cme-Chr11:10812050 Cme05g00263 Cme-Chr5:1916073 2.35E-54 dispersed
Cme05g00263 Cme-Chr5:1916073 Cme08g00551 Cme-Chr8:3459611 1.29E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64882 PF00069 Pkinase 4.70E-73 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00263 - K20606 csv:101217427 1238.4