Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00265 ATGACGATGGCGATACCTGGGAACATTGTCGTTCTTCTTCTCCTTATGTTGCTTCTCATCCTCCTTCTCCTCCTCATTGCCTGTAAACCATGGCGTTTCTTTTCATATTCCCGTTCTCGCACCATCAAGGTTCCTGACCTTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGATGTCACTCAAAACCAATTCAGTGAGCTTCCCAGAGATTATGATCTGGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCCCCAAGATTACAAGGACTGATTCATAAACAAAGACTGCCACCTTCATCTCCCCATTCAAGTCAGGGTGATAGATTGGTTCAAGATGTAGTTCCCAATCCTTTAGAAGTTATTTCAGTTGGTCAAACTCTTAAACGTACTTACTTTGCAAACCCAATTCCAAACCAGATTCCTGAAGTTCAAAAGCATGCAAAACTGAGTCCGGGAAGTGAGCAACTCCACGAAATTGCAAGTCAAGACATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTCACCTCCGGTCCTTCTCGTGGAGTTCGTTATTCAATACATTCTGAAAACACATCGAAGCTCCCATTGACGCTTGGAAGAGTACCTCATAGTGATTTACAGCTGAAAGATTCAGAAGTCTCAGGGAAGCACGCCTTGATAAAATGGAATCTAAATAGTATGAAATGGGAGCTTGTGGACTTGGGCAGCTTAAATGGGACCCTATTAAATTCTCAACCAATCAACAATCCTGATTCTGGAAGTAGACATTGGGGTGAACCAGTTGAGCTTGCGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACAGCTCAGATTGAGAACCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTGCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGTGATGGACATAGTGGAGTAGCGGCTGCCAAATCTGCTAGCGAAATGCTTCCGGAGAAAGTTGCCACAATTCTATCCGATCCACTAAAAAGGGAGAGGGTAGTATCTCTTCATGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGTATGAATCACTATTACGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTGATAGTGATGAAAATTACTTTGTGCAATGTGCGAATGTTGGGGACTCTGCTTGTGTTCTGAATGTTCATGGGAAGCAGATGAAGATGACAGAAGATCACAGAATAACTAGCTATTCAGAAAGACTTCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGAGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACCCTCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATCGGCGTGAAGAAGGCAATTCAGCTGGCCATTCAGGCTAGGGAAAGATACTCGTCAAGTGCCGAAAATTCAGCCGAAAAGGTTGCGAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTAATAGAATCACTTGTAAAGTTGAACCATAA 1740 42.99 MTMAIPGNIVVLLLLMLLLILLLLLIACKPWRFFSYSRSRTIKVPDLDLERPLVSDAADVTQNQFSELPRDYDLEGALQTDGHFRSPRLQGLIHKQRLPPSSPHSSQGDRLVQDVVPNPLEVISVGQTLKRTYFANPIPNQIPEVQKHAKLSPGSEQLHEIASQDISHGRSYLTLEVTSGPSRGVRYSIHSENTSKLPLTLGRVPHSDLQLKDSEVSGKHALIKWNLNSMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGEPVELASGDVITLGTTSKVYVHITAQIENHIPFGVGLASDPMALRRGGKKLAMEDVCYYQWPLAGVDQFGLFGICDGHSGVAAAKSASEMLPEKVATILSDPLKRERVVSLHDASDVLREAFSQTEACMNHYYEGCTATVLLVWADSDENYFVQCANVGDSACVLNVHGKQMKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDPRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAIQLAIQARERYSSSAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEVSNRITCKVEP 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1943982 1949768 + MELO3C014494.2.1 Cme05g00265 327328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00265 579 Gene3D - 302 570 IPR036457 -
Cme05g00265 579 SUPERFAMILY PP2C-like 308 567 IPR036457 -
Cme05g00265 579 CDD PP2Cc 307 567 IPR001932 -
Cme05g00265 579 Pfam FHA domain 200 275 IPR000253 GO:0005515
Cme05g00265 579 CDD FHA 173 281 IPR000253 GO:0005515
Cme05g00265 579 ProSiteProfiles PPM-type phosphatase domain profile. 295 567 IPR001932 -
Cme05g00265 579 PANTHER PROTEIN PHOSPHATASE 2C 70 35 578 - -
Cme05g00265 579 SMART PP2C_4 289 565 IPR001932 -
Cme05g00265 579 Pfam Protein phosphatase 2C 307 560 IPR001932 -
Cme05g00265 579 Gene3D - 167 301 - -
Cme05g00265 579 ProSiteProfiles Forkhead-associated (FHA) domain profile. 199 250 IPR000253 GO:0005515
Cme05g00265 579 SMART FHA_2 198 250 IPR000253 GO:0005515
Cme05g00265 579 PANTHER PROTEIN PHOSPHATASE 2C 35 578 IPR015655 GO:0004722|GO:0006470
Cme05g00265 579 SUPERFAMILY SMAD/FHA domain 172 283 IPR008984 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00265 Cme-Chr5:1943982 Cme07g00150 Cme-Chr7:961248 2.33E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00265 K01090 - csv:101217195 1112.44