Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00272 ATGTTGTCGAATCAGCTTCAAAATGGGATGGATAGAGCAAAAAACATGTGGTCTCTTCTTCCGAACACCGACGAAAATGAGGATGACCTTCTTAGTATCTTGAAGAAAAACGATGGGGGTGGTGTCGAAAGCCTTGATTATGAGGTTATCGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGGAAATTATTTGTTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGTTCATCGGCATAGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTCGAGAACTTTGCCGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAAAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCTATCAACTTGGCTCTAGTATTTTCATCCGTTTATATTGTCACACACTTCGCTCCTGCGGCAGCCGGATCTGGCATACCTGAAATCAAGGGATATTTGAATGGAATTGACATACACGGTGTTCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTAGCTTTAGGCAAAGAAGGGCCTCTTGTACACACAGGCGCATGTATTGCTTCTTTGTTAGGCCAAGGTGGCTCTGCTAAATATCATTTAAATTCCAGGTGGTTACAAGTGTTCAAGAGCGACCGGGATCGTCGTGATCTTGTTACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCTGTTGTGGTACGTGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGCGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCTTTATTCAACCAGCTTACTCTTTATATAACATATTGGCGACGAAACCATTTACACAAGAAGGGAAACCGAGTAAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATCTCCTTCGGACTACCACTTCTAAGGCAATGTACTCCATGTCCCAAACCCGATCCGGAATTGGGAAATGAATGCCCAAGGCCTCCAGGAACGTATGGGAACTACGTTAATTTTTATTGCAGCAAGGACAATGAATATAATGACCTTGCAACTATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCACGAAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACATTTGGTACTGCAGTTCCTGCTGGCCAATTTGTTCCCGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTTGTGGTTAGTTTCTACAAGAAGCCTAACATTGAAGAGGGAACATATGCCTTGTTGGGTGCTGCATCTTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAAGGGTATTCCATTACTAGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCCTTCCCTCGTGTTGTTAAGGTTGCCGATGTTGTTGGTATTTTACGGAGCAACAGACATAACGGTTTTCCTGTGATTGATTACGCTCGAAATGGAGAAACACGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTACAGTCCAAAGTAGATTTTCAGCATAGCCCCTTGCCTTCTGATCCAAGAGGATCTATATCAAGCAGGCACAATCTCAATGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATCGATTTACTTCCATATCTGAACCCATCTCCATATATTGTCCCTGAGGACATGTCTCTGACAAAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGAGCTCGTCGTCCAGATAGAAGAGTACATACAAGGAATGGGGATGTGGAGAGTCCACTTCTTAATGGACTTTTGGTCAGTAACACCGATGGCTGA 2274 42.35 MLSNQLQNGMDRAKNMWSLLPNTDENEDDLLSILKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLALVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEESQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMTVIGVIGGLLGALFNQLTLYITYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVGILRSNRHNGFPVIDYARNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSISSRHNLNEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKDSEDSDAMELQSTSVRARRPDRRVHTRNGDVESPLLNGLLVSNTDG 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1996539 2005204 + MELO3C014487.2.1 Cme05g00272 327335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00272 757 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 726 - -
Cme05g00272 757 SUPERFAMILY Clc chloride channel 52 568 IPR014743 -
Cme05g00272 757 MobiDBLite consensus disorder prediction 726 740 - -
Cme05g00272 757 CDD ClC_6_like 43 566 - -
Cme05g00272 757 Pfam Voltage gated chloride channel 130 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g00272 757 MobiDBLite consensus disorder prediction 710 748 - -
Cme05g00272 757 Gene3D Clc chloride channel 69 567 - -
Cme05g00272 757 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 726 - -
Cme05g00272 757 SUPERFAMILY CBS-domain pair 571 710 IPR046342 -
Cme05g00272 757 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g00272 757 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g00272 757 PRINTS Plant CLC chloride channel signature 284 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g00272 757 PRINTS Plant CLC chloride channel signature 266 276 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00866 Cme-Chr1:9866824 Cme05g00272 Cme-Chr5:1996539 2.53E-26 dispersed
Cme02g01498 Cme-Chr2:22068429 Cme05g00272 Cme-Chr5:1996539 4.14E-19 dispersed
Cme05g00272 Cme-Chr5:1996539 Cme05g01882 Cme-Chr5:27586544 3.24E-176 dispersed
Cme05g00272 Cme-Chr5:1996539 Cme05g00273 Cme-Chr5:2002373 7.80E-24 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00272 K05016 - csv:101215989 1430.62