Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g00272 | ATGTTGTCGAATCAGCTTCAAAATGGGATGGATAGAGCAAAAAACATGTGGTCTCTTCTTCCGAACACCGACGAAAATGAGGATGACCTTCTTAGTATCTTGAAGAAAAACGATGGGGGTGGTGTCGAAAGCCTTGATTATGAGGTTATCGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGGAAATTATTTGTTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGTTCATCGGCATAGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTCGAGAACTTTGCCGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAAAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCTATCAACTTGGCTCTAGTATTTTCATCCGTTTATATTGTCACACACTTCGCTCCTGCGGCAGCCGGATCTGGCATACCTGAAATCAAGGGATATTTGAATGGAATTGACATACACGGTGTTCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTAGCTTTAGGCAAAGAAGGGCCTCTTGTACACACAGGCGCATGTATTGCTTCTTTGTTAGGCCAAGGTGGCTCTGCTAAATATCATTTAAATTCCAGGTGGTTACAAGTGTTCAAGAGCGACCGGGATCGTCGTGATCTTGTTACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCTGTTGTGGTACGTGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGCGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCTTTATTCAACCAGCTTACTCTTTATATAACATATTGGCGACGAAACCATTTACACAAGAAGGGAAACCGAGTAAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATCTCCTTCGGACTACCACTTCTAAGGCAATGTACTCCATGTCCCAAACCCGATCCGGAATTGGGAAATGAATGCCCAAGGCCTCCAGGAACGTATGGGAACTACGTTAATTTTTATTGCAGCAAGGACAATGAATATAATGACCTTGCAACTATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCACGAAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACATTTGGTACTGCAGTTCCTGCTGGCCAATTTGTTCCCGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTTGTGGTTAGTTTCTACAAGAAGCCTAACATTGAAGAGGGAACATATGCCTTGTTGGGTGCTGCATCTTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAAGGGTATTCCATTACTAGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCCTTCCCTCGTGTTGTTAAGGTTGCCGATGTTGTTGGTATTTTACGGAGCAACAGACATAACGGTTTTCCTGTGATTGATTACGCTCGAAATGGAGAAACACGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTACAGTCCAAAGTAGATTTTCAGCATAGCCCCTTGCCTTCTGATCCAAGAGGATCTATATCAAGCAGGCACAATCTCAATGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATCGATTTACTTCCATATCTGAACCCATCTCCATATATTGTCCCTGAGGACATGTCTCTGACAAAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGAGCTCGTCGTCCAGATAGAAGAGTACATACAAGGAATGGGGATGTGGAGAGTCCACTTCTTAATGGACTTTTGGTCAGTAACACCGATGGCTGA | 2274 | 42.35 | MLSNQLQNGMDRAKNMWSLLPNTDENEDDLLSILKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLALVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEESQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMTVIGVIGGLLGALFNQLTLYITYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVGILRSNRHNGFPVIDYARNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSISSRHNLNEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKDSEDSDAMELQSTSVRARRPDRRVHTRNGDVESPLLNGLLVSNTDG | 757 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1996539 | 2005204 | + | MELO3C014487.2.1 | Cme05g00272 | 327335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g00272 | 757 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-D | 4 | 726 | - | - | |
Cme05g00272 | 757 | SUPERFAMILY | Clc chloride channel | 52 | 568 | IPR014743 | - | |
Cme05g00272 | 757 | MobiDBLite | consensus disorder prediction | 726 | 740 | - | - | |
Cme05g00272 | 757 | CDD | ClC_6_like | 43 | 566 | - | - | |
Cme05g00272 | 757 | Pfam | Voltage gated chloride channel | 130 | 546 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | PRINTS | Chloride channel signature | 553 | 567 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | PRINTS | Chloride channel signature | 497 | 513 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | PRINTS | Chloride channel signature | 462 | 482 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | PRINTS | Chloride channel signature | 515 | 534 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme05g00272 | 757 | MobiDBLite | consensus disorder prediction | 710 | 748 | - | - | |
Cme05g00272 | 757 | Gene3D | Clc chloride channel | 69 | 567 | - | - | |
Cme05g00272 | 757 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 4 | 726 | - | - | |
Cme05g00272 | 757 | SUPERFAMILY | CBS-domain pair | 571 | 710 | IPR046342 | - | |
Cme05g00272 | 757 | PRINTS | Plant CLC chloride channel signature | 414 | 430 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cme05g00272 | 757 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cme05g00272 | 757 | PRINTS | Plant CLC chloride channel signature | 284 | 291 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cme05g00272 | 757 | PRINTS | Plant CLC chloride channel signature | 266 | 276 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00866 | Cme-Chr1:9866824 | Cme05g00272 | Cme-Chr5:1996539 | 2.53E-26 | dispersed | |
Cme02g01498 | Cme-Chr2:22068429 | Cme05g00272 | Cme-Chr5:1996539 | 4.14E-19 | dispersed | |
Cme05g00272 | Cme-Chr5:1996539 | Cme05g01882 | Cme-Chr5:27586544 | 3.24E-176 | dispersed | |
Cme05g00272 | Cme-Chr5:1996539 | Cme05g00273 | Cme-Chr5:2002373 | 7.80E-24 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g00272 | K05016 | - | csv:101215989 | 1430.62 |