Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00289 ATGCAGACCGATCACCGTAAGAAGAATTCTGCAGAATTGGACTTTTTCTCTGAATATGGTGATGCCAACAGATTCAAAGTCCGCGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCTGTTGACACTCTCACCAATGAAAAAGTGGCAATAAAGAAGATACATGATATTTTTGAACATGTATCTGATGCTGCCCGGATTCTTCGTGAGATAAAGCTCCTGAGGCTTCTACGCCATCCCGATATTGTTGAAATTAAGCACATTATGTTACCACCTTCTCGTAGGGGGTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAATGATGATTTAACAAAAGAGCACTATCAATTTTTCCTCTACCAGCTACTACGTGCACTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTTAAAATATGTGATTTTGGATTGGCAAGAGTTGCTTTCAGTGACACCCCGACAACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCCGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTGACCGGGAAACCACTTTTTCCTGGTAAAAATATTGTTCATCAGCTTGATTTGATGACAGATCTCCTTGGAACGCCTTCATTAGATACCATTTCTCGGGTAAGAAATGAAAAGGCCAGGAGGTACTTGACTAGTATGAGGAAGAAGCAGCCAATATCCTTTTCTCAGAAGTTCCCAAATGCTGATCCCCTAGCCCTACAATTGCTACAACGGTTACTTGCATTTGATCCAAAGGATCGACCTACTGCCGAAGAGGCATTGGCAGATCCTTACTTTAAGGGGCTGGCTAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAGAGGAGAAAAGTCACAAAGGATGACATTCGCGAGTTGATATTCCTTGAGATACTCGAATACCATCCTCAATTGCTGAAAGACTACTTAAATGGAACCGAGAGATCAAATTTTCTTTATCCTAGTGCACTAGATCAGTTCAAAAAGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGTTTATCCTCTAGAAAGAAAACATGCATCTCTTCCTAGGTCTTCAGTACAGTCAAATACCATTCCACCAAAAGTAACATCAAATATTGTTTCCTTTAAAGACCGATATGCGCCATCAGGTCCGTTCGGCAGTCAGCTTTACAAAGATTCAGCAGCACAGAGGATTGCTGCTGCTCAAGCCAAGCCTGGAAGAATCTCAGGCCCGGTCATGCCATATGACAGTGGAAGTACCATTAAAGATGCTTACGACCCACGAATGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCAACATATTATTACCAGCAATCTTGCGGCCAAAATGAAGAAAGATCAGCAACTGGGGCTGAGCAGGACACGTCCATGCAATGCAAACAATCCCCTCAATGTGGAATGGCTGCCAAATTAGCCGGAGATACAGCTGCTGCTTCTGGTGCTTTCTCAAATTCTTTCTTTATGGCACGTGTAGGCATGCCCAAGATGGGAAACAATGACCGTGCTGCACATTTGCAGGTAAGCGCCCAATATGATGCTGGAGCTGTTGCTGCTGCAACTACCACTACCCATCGAAACACTGGCGTGGTCGAGTATAGCATGACCAGAATGTGTTAG 1821 42.61 MQTDHRKKNSAELDFFSEYGDANRFKVREVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPISFSQKFPNADPLALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHASLPRSSVQSNTIPPKVTSNIVSFKDRYAPSGPFGSQLYKDSAAQRIAAAQAKPGRISGPVMPYDSGSTIKDAYDPRMLIRSALPSHAIHPTYYYQQSCGQNEERSATGAEQDTSMQCKQSPQCGMAAKLAGDTAAASGAFSNSFFMARVGMPKMGNNDRAAHLQVSAQYDAGAVAAATTTTHRNTGVVEYSMTRMC 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2156882 2161387 + MELO3C014472.2.1 Cme05g00289 327352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00289 606 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 474 - -
Cme05g00289 606 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme05g00289 606 Pfam Protein kinase domain 26 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00289 606 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cme05g00289 606 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Cme05g00289 606 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00289 606 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00289 606 CDD STKc_TDY_MAPK 24 361 - -
Cme05g00289 606 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cme05g00289 606 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 474 - -
Cme05g00289 606 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00289 Cme-Chr5:2156882 Cme11g01943 Cme-Chr11:27494941 0 dispersed
Cme11g01564 Cme-Chr11:23160600 Cme05g00289 Cme-Chr5:2156882 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64883 PF00069 Pkinase 9.60E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00289 - - csv:101214068 1150.58