Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00299 ATGCTCTCTTTTTTAGCTGCAATCCTGTTAATAATAACGATTGCTTTTGTGTTGAGAAGCAATAAGAGAAGCAAAAATGTCCCACCAGGGGAAATGGGTCTACCTTGGATTGGAGAAACAATGGCTTTTTACAGAGCTCAAAGTAAAAACAGATTGTTTGAAGACTTTGTTGAGCCAAGAGTAGCAAAATATGGAAAAATCTTCAAAACAAACTTAATGGGATCTCCAACAGTGGTTGTTAATGGAGCTGAAGCCAATAGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTAAGTTCATGGCCATCGAGCTCCGTTCAGTTGATGGGTGAAGAATGTATTATGCAGAAGGAAGGTGAAAAGCATAGATGTGTTCGTGGTCTTATTGCCTCAGCTCTGTCTACTTCGAGTCTTGAAGTTATGATGCCTAAACTGTGCAATACAATTCAGGTTTATTTGGATACTAAGTGGGTTGATTGTGACACAGTTGGTCTCTTTCGCTCGGCTAAAGTATTGACATTTACCATTGTGTTTGAGTGTTTATTGGGTATTAAAGTGGAGCCACGTGTGTTAACGACGTTTGAGAGGGTTTTGGAAGGTGTTTTTGCACCACCATTCAGGTTTCCAGGCACAAGATTTTCAAGAGCCAAGAAAGCAAGACTGGAGATAGAGACAATGCTAAGGGAAGTGGTGAGAGAGAAGAGGAGAAAAATTGAAGGAAAACTAGAAGAAGAAGAACAATGTGGGTCATTGCTTTCAAGGATGGTGAGAGCAATGATAGGAGGGGAAATCAGTGAAATGGAAGTCGTAGACAATATTGTTTTGCTTGTTTTTGCAGCTCATGATACGACCTCCTTTGCCATTGCCATGACTTTCAAAATGTTGTCTCAGCACACAAACTGCTACTCACTTCTTCTCCAGGAACACGCTGACATAGTAGCTCGGGAGAGCATTAGATTGTTTCCCCCTATATTTGGTTCTTTCAGGAAAGCCATTTCAGACATTGAATACGAGAGCTTTCTCATTCCCAAAGGATGGAAGGTCTTATGGACAACGTACGGAACACATTATGGAGAAGAGTACTTTGGAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCTCAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTAGCGAAATTGAACATACTCATCTTTATACACTCGGTTGTAACCCGTTATGATTGGAGTTTAGTTCATCCAGATGAGCCAATCATAATGGATCCTCTCCCTGTCCCTTGTCATGGAATGCCTATTAAGATTTCTCCAAAATCAGAAATTTGTCCCAATGTTCACCAAATGTAA 1362 40.68 MLSFLAAILLIITIAFVLRSNKRSKNVPPGEMGLPWIGETMAFYRAQSKNRLFEDFVEPRVAKYGKIFKTNLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSSSVQLMGEECIMQKEGEKHRCVRGLIASALSTSSLEVMMPKLCNTIQVYLDTKWVDCDTVGLFRSAKVLTFTIVFECLLGIKVEPRVLTTFERVLEGVFAPPFRFPGTRFSRAKKARLEIETMLREVVREKRRKIEGKLEEEEQCGSLLSRMVRAMIGGEISEMEVVDNIVLLVFAAHDTTSFAIAMTFKMLSQHTNCYSLLLQEHADIVARESIRLFPPIFGSFRKAISDIEYESFLIPKGWKVLWTTYGTHYGEEYFGDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHSVVTRYDWSLVHPDEPIIMDPLPVPCHGMPIKISPKSEICPNVHQM 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2208479 2211858 - MELO3C014463.2.1 Cme05g00299 327362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00299 453 SUPERFAMILY Cytochrome P450 21 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 13 442 - -
Cme05g00299 453 Coils Coil 216 236 - -
Cme05g00299 453 PRINTS E-class P450 group I signature 268 285 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PRINTS E-class P450 group I signature 382 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PRINTS E-class P450 group I signature 351 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PRINTS E-class P450 group I signature 392 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PANTHER CYTOCHROME P450 26 13 442 - -
Cme05g00299 453 Gene3D Cytochrome P450 17 443 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 Pfam Cytochrome P450 28 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 385 394 IPR017972 GO:0005506|GO:0016705
Cme05g00299 453 PRINTS P450 superfamily signature 383 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PRINTS P450 superfamily signature 312 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g00299 453 PRINTS P450 superfamily signature 279 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00299 Cme-Chr5:2208479 Cme06g01445 Cme-Chr6:13470519 7.93E-88 dispersed
Cme05g00299 Cme-Chr5:2208479 Cme01g00047 Cme-Chr1:374836 3.48E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00299 - - csv:101220115 842.032