Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00309 ATGGCCGTCAAATCTCAGTCTCAAAATCGAATCAGAGCCAAACTTCATTTCTTCTATGCAATTCTTCTTGCTGCCTTCGGATTAGCAGCCGCAGCCAAGCTTCATCGAGAAGAAGTGAAAGCGTTGAAAGAGATCGAGAAGAAATTAGGGAAAAAGGATTGGAATTTTAACATAGATCCTTGCAGTGGAGAAGGAAAATGGCTCGTTGTTAATGGAAGAAAAGGCTTCGAAAGCTCCGTCACTTGTGATTGCTCTTTCAACCGTAACTCCACTTGCCACATCGTCGCCATAGCTTTGAAGTCCCAGAATCTATCAGGCATTGTGCCACCAGAGTTTTCCAAGCTTCGGTTCCTCAAACAGCTAGATCTCAGTCGAAACTGCCTCACTGGTTCTGTTCCTTCACAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAATAAATTGTCCGGGCCATTCCCGAAAGTTCTTACTAATATCACCACTCTCAGAAACTTGAGCATTGAAGGAAATCAATTTTCTGGCCGAATTCCACCAGAGATTGGTAAACTAGTTAATTTGGAAAAATTAGTTCTGTCATCAAATGGCCTCACCGGAGAATTGCCTAAAGGGCTAGCAAAATTGTCGAACTTAACTGATATGAGAATAAGTGACAACAACTTCTCTGGAAAGATACCTGAGTTCATTAGTAATTGGGCACAGATTGAAAAACTGCATATACAAGGCTGCTCCCTCGAAGGTCCCATACCCTTAAGTATCTCCACAATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGAAGGTCTCCTTTTCCACCGTTGAGCAATATAAAATCCATGAAGACGCTGATCCTGAGGAAGTGCTTCATTTTTGGAGAAATCCCGAAATACATTGGGGACATGAAAAAATTAAAAAACTTAGACCTCAGCTACAATGACTTGACTGGCGAAGTTCCTGCATCTTTTGAACGACTGGATAAAATAGATTACATATTGTTGACAGGAAACAAGCTCAATGGAATTATTCCTGGTTGGATTTTAGGGAGCAACAAGAATGTAGATCTCTCTAACAACAATTTCACCTGGGAAAACTCGAGCCCAGCTGAGTGTCCTCGTGGTAGTGTAAATTTAGTTGAGACATACTCACCGTCTGCAGAAAAATTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTTCCATGTTCTGCATCAAGGGAACAGCATCACTACTCCTTGCACATTAACTGTGGCGGTAAAGAAACATCTATAAGGGGTGAAAGGTATGAAGCAGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACCGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATCGTGACGAATACATCTGCTCTTTCTAATGTCTCTGCGAGTGATTCTGAACTGTATACCAAAGCGAGAAACTCTCCTCAATCTCTTACATACTATGGGCTATGTCTCATAAATGGGAATTATACTGTTAAACTTCACTTTGCAGAGATTGTATTTATAAATGACAGTTCGTTCAACAGCCTGGGAAGGCGAGTTTTTGATGTGTATATTCAGGAAAAGCTAGTCCTGAAAGATTTTGATATTGAACATGAAGCAGGGGGTACAGGTAAGCCCATTATAAAAACATTTACTGTAGCTGTCACAAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATTCCACTTAGAGGAAACTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAATTTTACACCTCCTAAAAACCATGGGAAGAAGCATTACACCATCATAATTATTGGGACAACAGCAGCAGCTTTTGTTCTCCTTCTTCTGGTGTTATGTATTATGAGGAGAATAGGGTGGCTGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCAAACAAAGTTGGGGAAGGTGGTTTTGGTGCGGTTTACAAGGGCCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAGCTGTCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCACTGCAACATCCAAATCTTGTGAAGCTTTATGGATGTTGTGTTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGTGCCCTTTTCAGAAATGACCCAGGTTTTAAATTGAAGTTGGACTGGCCCACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCACGAGGAGTCAAGACTGAAAATCGTACATCGGGATATCAAGACAAGTAATGTGTTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGCTTGGCTAAGCTTCATGAAGATGACAATACCCACATCAGTACTAGAGTTGCCGGAACCATTGGTTATATGGCTCCTGAATATGCAATGCGTGGATGCTTGACCAGCAAAGCTGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACAGACCCAAAGAGGATTTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAAGGAAGTCTATTGGAGTTGGTGGATCCAGCCTTGGGGTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAACGCATCCCCAACTCTTCGGCCTCTAATGTCTCAAGTGGTCAGCATGCTCGAAGGACGAACTCCAGTTCAAGCACTTCTTTCTGATCCTGGATTTTCAGCCATCAATTCCAAATTGAAAGCTCTCAGAAATCACTTTTGGCAACAATTGAGCCCTACACACAGTTTATCATTGGACGATTTCCCTAGTGATTCATTGAGTTCGATTGTGGATCTGGAGGCAGAGGAGAATTACAATCTAGTAAGATCCCATTCTGTTAAAAGGACTGGAATAGAAAATTAG 3075 41.01 MAVKSQSQNRIRAKLHFFYAILLAAFGLAAAAKLHREEVKALKEIEKKLGKKDWNFNIDPCSGEGKWLVVNGRKGFESSVTCDCSFNRNSTCHIVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSVPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEIGKLVNLEKLVLSSNGLTGELPKGLAKLSNLTDMRISDNNFSGKIPEFISNWAQIEKLHIQGCSLEGPIPLSISTMTSLTDLRISDLKGGRSPFPPLSNIKSMKTLILRKCFIFGEIPKYIGDMKKLKNLDLSYNDLTGEVPASFERLDKIDYILLTGNKLNGIIPGWILGSNKNVDLSNNNFTWENSSPAECPRGSVNLVETYSPSAEKLTRIHPCLKRNFPCSASREQHHYSLHINCGGKETSIRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIVTNTSALSNVSASDSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGRRVFDVYIQEKLVLKDFDIEHEAGGTGKPIIKTFTVAVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKNHGKKHYTIIIIGTTAAAFVLLLLVLCIMRRIGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFRNDPGFKLKLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEDFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTHSLSLDDFPSDSLSSIVDLEAEENYNLVRSHSVKRTGIEN 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2296795 2307187 - MELO3C014454.2.1 Cme05g00309 327372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00309 1024 Gene3D - 412 603 - -
Cme05g00309 1024 Gene3D Ribonuclease Inhibitor 35 271 IPR032675 -
Cme05g00309 1024 Gene3D Phosphorylase Kinase; domain 1 647 751 - -
Cme05g00309 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Cme05g00309 1024 Pfam Malectin domain 416 599 IPR021720 -
Cme05g00309 1024 CDD STKc_IRAK 682 950 - -
Cme05g00309 1024 Pfam Leucine rich repeat 285 343 IPR001611 GO:0005515
Cme05g00309 1024 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 996 - -
Cme05g00309 1024 SMART serkin_6 676 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00309 1024 ProSiteProfiles Protein kinase domain profile. 676 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00309 1024 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 70 996 - -
Cme05g00309 1024 SUPERFAMILY Protein kinase-like (PK-like) 661 949 IPR011009 -
Cme05g00309 1024 Gene3D Ribonuclease Inhibitor 272 374 IPR032675 -
Cme05g00309 1024 Pfam Protein tyrosine and serine/threonine kinase 679 891 IPR001245 GO:0004672|GO:0006468
Cme05g00309 1024 ProSitePatterns Protein kinases ATP-binding region signature. 682 704 IPR017441 GO:0005524
Cme05g00309 1024 SUPERFAMILY L domain-like 84 366 - -
Cme05g00309 1024 Gene3D Transferase(Phosphotransferase) domain 1 752 957 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01524 Cme-Chr1:20193869 Cme05g00309 Cme-Chr5:2296795 0 dispersed
Cme05g00309 Cme-Chr5:2296795 Cme07g00510 Cme-Chr7:4228632 0 dispersed
Cme12g01545 Cme-Chr12:22912626 Cme05g00309 Cme-Chr5:2296795 2.56E-61 dispersed
Cme05g00309 Cme-Chr5:2296795 Cme07g00504 Cme-Chr7:4173782 1.34E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64884 PF07714 PK_Tyr_Ser-Thr 2.00E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00309 - - csv:101219400 1944.09