Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00324 ATGCGGCGAGGTAGAGCCACGGATCCATTGACGGCGCCAGAATCAGTCCAAGAACCTGTTAAAGAAGTCCGATTCAGAGGCGTTCGGAAGCGTCCATGGGGCCGATACGCCGCCGAGATTAGAGATCCTTGGAAGAAAACTCGAGTTTGGCTAGGTACCTTCGATACGGCGGAGGATGCTGCCAGAGCTTACGATGAAGCTGCTCTCTCTCTCCGAGGACCCAAGGCGAAAACGAACTTCCCTTTGCATCCATCTACTATCTCTGTTCATCAACAAATTCCGTTCTCGCAGCAGTTTCATGATTCCGGTGGATTCTGTGAGATTAGTAACATTATTCCAGTTAATAGACCTACGTCGAGTAGTCTGAGCTCCACCGTGGAGTCATTTAGCGGGCCACGGCTTTCGATTCCGGTTCCGTCGGTTCCAAAGCTCCGTCGGAAGTCCCAGCCGCAGGTTGCTCCCGACGATTGCCATAGCGACTGTGATTCATCGTCCTCGGTCGTTGATGACAGTGAGGAATATGCTCAGTCGTCGTCAATTCGTAGAGTGTTGCCGTTCGATCTGAATCTACCTCCTCCACTGCCGCCGCCACATGACGTCGATTTATCCGGTGATGATCTTCATGCCACTGCTCTGTGTTTTTGA 645 52.09 MRRGRATDPLTAPESVQEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSSSLSSTVESFSGPRLSIPVPSVPKLRRKSQPQVAPDDCHSDCDSSSSVVDDSEEYAQSSSIRRVLPFDLNLPPPLPPPHDVDLSGDDLHATALCF 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2379675 2380939 - MELO3C014441.2.1 Cme05g00324 327387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00324 214 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Cme05g00324 214 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Cme05g00324 214 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Cme05g00324 214 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Cme05g00324 214 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Cme05g00324 214 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Cme05g00324 214 MobiDBLite consensus disorder prediction 137 174 - -
Cme05g00324 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 18 188 - -
Cme05g00324 214 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Cme05g00324 214 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Cme05g00324 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00324 Cme-Chr5:2379675 Cme06g02844 Cme-Chr6:35914585 4.07E-44 dispersed
Cme07g02066 Cme-Chr7:25529775 Cme05g00324 Cme-Chr5:2379675 3.47E-23 dispersed
Cme12g01327 Cme-Chr12:21299455 Cme05g00324 Cme-Chr5:2379675 2.90E-31 dispersed
Cme11g01515 Cme-Chr11:22406414 Cme05g00324 Cme-Chr5:2379675 1.35E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41322 PF00847 AP2 6.20E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00324 K09286 - csv:101210265 360.918