Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00439 ATGGCTTTCCAGAAGATCGAAGCAACCAATTTCTATACGGTTCTTCTATGGTTTATGGTCTACGCAATAACTCACTGCTTTGCGGAATCGTCGACGTGCTTGATGGTGTACAAGGAAGGCGGCGCTCCGGCGGTATTTCAATCCCCGAAATGCCCTCTTTGGAAGCTCTCTGACTACACTTTTCAATCTCCCAATGCCCCTCATTGCCAAATTGCAATGCATCAGGGTCGAAGAAAGTATCAGGAGGATCGCGCTCTTTGTGCTCTCGACGTCCGAATTCCCTTCCTAAGTAAAACAGGTCTTATGGAGGTGCCTGTGGGAATTATAGCAGTTTTTGATGGTCATAATGGTGCTGAAGCTAGTGAGATGGCTTCAAAGATTTTGTTGGAGTATTTTGTTGTGCATACTTATTTTCTTCTTGATGCCACTTATTCTGGAATTTTCAAGAGACCCTTTAAGACATTTTCGAATGAGAGGGAACATGGTGCCATCTTTAATCAACTTAATTGGAGGGAAAAAATTAGTAACCGTGATCTAGAACTTGGAAGGCTCAAATACTTACTTCCAGCCGATTTTGATGATGATTTTCATTTGGAAATTCTGAAAGAAGCACTGTTGAGAGCTATACAAGATGTTGATAAAACATTTTCCAAGGAAGCACATAAAAATAATCTCGTTTCCGGTTCTACTGCTACTGTTATATTATTAGCCGATGCACAAATTTTGGTTGCAAACATTGGTGACTCAAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTGCAGAGGCTAAAGCCACCTTTTTAAGGTTATACAAGCAAAAAAGATATAGCGGTGCCTCACGTGCAAGGGGTTATGGAAATTCTCGACCAGATTCATATGATGGGCTGAAGCATTTTTATGTCAAAGAATTGACAAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCAAGAGTAAATGGTCAGTTGGCAATAAGCAGAGCAATTGGTGATGTGTCTTTCAAAAGTTATGGGGTTATATCTGCACCGGAGGTAACTGACTGGCAACCTTTGTCTACTAACGATAGCTTTTTGGTGGCTTCATCTGATGGCATTTTTGAGAAACTGAGCTCACAAGATGTTTGTGATTTGTTGTGGGAAATACACAATGATGGCATGTCAAGTTTTGAACATTCTCCTTCATGCTCATACTCACTGGCGGATTGCATTGTTAGCACTGCATTTGAACGGGGAAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGGTAGTTCTTCTCGTAGATTTCAGGAGGGGAGCTTTGTTGCACAGAGAGACTCAAGTTTTCCCATATCTGGAATAGAAAATCTTATTAAAGAGCACTCAGGCAAGGGTATCTCTTCCAGTGCCATGCAACTGGAGCATTCTCATCCAGTTATGTCTAAGTTCAACAGATTATTGGTTGAAGGAAGACATAATAATCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAGTACAAGGATTACATATTGCGAACTCAAAATGAAGAAGAAGAATATGTATGTGATCTACCCCATGCTCTTCCAGATTCCTTCAATCAGCAATATGGTGGATCTGTAAATGTGTACACTGACCAAAGCTTGTGCTTTCATCTTGGGATGATTGGAGCTAAAGATCAGTGCTTTAATCCTGAAGGCTTCGCTAGTTTTATTGGTTTGCTTGAATCAATTCCTTTTCACGATCCTGGTCCAGATTATCAACTATTTGAGCATTCACCATCTGTATTGAGGTATGTGTTGAAGAAAAGGTTTGCTCGTGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATGGAAACTGTCAGGAAGCATTTAGTTCAGTAGGAGAGAATGATAATGTTTCGTGCAACTCATCTTTTGAAGACATCAATGCCAGAAATTATGGCTGCTCTTCAAATAGTTCTCAAGCCTATTCTCTGGAGAATAACTTGTTCATCATGAAACGTGTTATGGTCGAAAGAGGTGCCGGAATCTATCTGAGTGGCTTACGGGAGAAATATTTTGGTGAAATATTTTTTAATGCTTCTACATGCCTGGGAGATGTGTTATCAACTGGAACATCAAACTTTGTCTTTGAAGAATCACCATGGGGATCTAAAGACTTATTGACAAAGGATGAATCACTGTGTCATAAAGTAGGGGAAACTAGGCATTTTGAAAATATTTCTCCCAATCGTTTTCAGGCAAATAGAGTTATCTATGAAGAAGGTTTAAATCATATTGTGAGATATGTTGAATCTTTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTACGAAGGCACTTCCCTCTCAAAGCTCATGTATTCTATTGAAAATGCTGATGAAGAGAAAGTTGAGCAGAAAAACCACGTTCAAATTCTGCGACCTTCTAAGTGGTGGCATTGGTTGAAAACAACAGAAGCAGGACAAGAGGAGATGAAAAATTTAATACGTCAGTTGTTGATGGCACTCAAGTCTTGTCATGACCGCAATATCACTCACAGGGACATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGAAAGTCGAATGGAAGATGAGAACGTCTCTACTAAAATGCGCATTATTGACTTTGGTAGTGCTATTGATGAATTCACAGTTAAGCATCTTTATGGGTCTATGGGGCCTTCTAGAGCGGAACAGACTTATGATTACACACCTCCTGAAGCCTTGCTAAATTCAAGTTGGTATCAGGAAATGTCAGGTTCTACTTTAAAGTATGATATGTGGAGCGTTGGTGTAGTAATGTTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTAAGTGACTTAACCCGTGTTCTTTTGGACCAGCATCTTCAAGGCTGGAATGACGGCTTAAAGCAGCTAGCATACAAGCTTAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGCTCCTCAAGAAGTTATCAAAAAAGTGGTCATCAAGGAGATTCCCCAGCATCCTGGCAATGCTCTGAAGAAGTTTTTGCCCGCCAAATAAAGAGTAGAGATCCTCTTAAACTCGGGTTTCCAAATGTTTGGTCTCTACGATTGGTCCGCAATCTACTACAATGGAATCCAGAGGACCGTTTAAATGTCAATGATGCTTTGCAACATCCTTATTTCCGCCCCTCTCCTAAAGGAGGATGA 3276 40.48 MAFQKIEATNFYTVLLWFMVYAITHCFAESSTCLMVYKEGGAPAVFQSPKCPLWKLSDYTFQSPNAPHCQIAMHQGRRKYQEDRALCALDVRIPFLSKTGLMEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRPFKTFSNEREHGAIFNQLNWREKISNRDLELGRLKYLLPADFDDDFHLEILKEALLRAIQDVDKTFSKEAHKNNLVSGSTATVILLADAQILVANIGDSKAFLCSEKFQSPAEAKATFLRLYKQKRYSGASRARGYGNSRPDSYDGLKHFYVKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAISRAIGDVSFKSYGVISAPEVTDWQPLSTNDSFLVASSDGIFEKLSSQDVCDLLWEIHNDGMSSFEHSPSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPGSSSRRFQEGSFVAQRDSSFPISGIENLIKEHSGKGISSSAMQLEHSHPVMSKFNRLLVEGRHNNLGCFYLSENLDEYKDYILRTQNEEEEYVCDLPHALPDSFNQQYGGSVNVYTDQSLCFHLGMIGAKDQCFNPEGFASFIGLLESIPFHDPGPDYQLFEHSPSVLRYVLKKRFARGSYGEVWLAFHGNCQEAFSSVGENDNVSCNSSFEDINARNYGCSSNSSQAYSLENNLFIMKRVMVERGAGIYLSGLREKYFGEIFFNASTCLGDVLSTGTSNFVFEESPWGSKDLLTKDESLCHKVGETRHFENISPNRFQANRVIYEEGLNHIVRYVESFESRSNEIWLVFHYEGTSLSKLMYSIENADEEKVEQKNHVQILRPSKWWHWLKTTEAGQEEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNESRMEDENVSTKMRIIDFGSAIDEFTVKHLYGSMGPSRAEQTYDYTPPEALLNSSWYQEMSGSTLKYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDQHLQGWNDGLKQLAYKLRSFMELCILIPGSSSRSYQKSGHQGDSPASWQCSEEVFARQIKSRDPLKLGFPNVWSLRLVRNLLQWNPEDRLNVNDALQHPYFRPSPKGG 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3938155 3971942 - MELO3C014325.2.1 Cme05g00439 327502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00439 1091 SUPERFAMILY PP2C-like 64 441 IPR036457 -
Cme05g00439 1091 SMART PP2C_4 62 438 IPR001932 -
Cme05g00439 1091 CDD PP2Cc 75 440 IPR001932 -
Cme05g00439 1091 PANTHER ALPHABET, ISOFORM E-RELATED 20 598 - -
Cme05g00439 1091 SMART serkin_6 612 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00439 1091 Pfam Protein kinase domain 771 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00439 1091 SUPERFAMILY Protein kinase-like (PK-like) 771 1086 IPR011009 -
Cme05g00439 1091 ProSiteProfiles PPM-type phosphatase domain profile. 68 440 IPR001932 -
Cme05g00439 1091 Gene3D - 60 446 IPR036457 -
Cme05g00439 1091 ProSiteProfiles Protein kinase domain profile. 612 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00439 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672|GO:0006468
Cme05g00439 1091 Pfam Protein phosphatase 2C 200 433 IPR001932 -
Cme05g00439 1091 Gene3D Transferase(Phosphotransferase) domain 1 818 1085 - -
Cme05g00439 1091 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 20 598 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00439 Cme-Chr5:3938155 Cme06g02312 Cme-Chr6:30508147 5.55E-45 dispersed
Cme05g00439 Cme-Chr5:3938155 Cme03g00181 Cme-Chr3:2201117 8.86E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64885 PF00069 Pkinase 2.10E-26 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00439 - - csv:101210198 2053.1