Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00464 ATGGAAGAGGTTGAAGAAGCTACCAAATCAGCCATTGAGAGCTGCCATGGAGTTTTGAATCTTTTACTTCAACCTCCTCCTTCTCCTCCTCATCAACACCATTTCAAAAATTTAATGGTTGAAACTAAAGAAGCTGTTTTCAAGTTCAAGAAAGTGATTTCTCTTTTGAATTCTGATTTTAGTCATCCAAGATTTAGAAATTTCAACAAAATCCCTCTCCCTTTACCTCAAAATTCCCTATTGGATTCCCCTAATTACACTCTACATCCTCCAAACAAAAATCTTTTCAATTTCCCCCCTGGTTCTAATAGTAAAGTTTCAATTTTTTTGGGAAACCCAGATTTAGAATTGAGTCAAAATGATAAGAATACCCTTCATATCCCCAAACAATCTCCTTCTTTAAACTTTAGCTTCCCCCATCATCATCATCATCAACAACAACAACAACAACAGAGCGTTCTAGCTCATCAGAAACAAATGAAACAGCAAGCTGAAATGACGTTTCTTAGGAATAACAATGGGATGAATCTGAATTTTGATACATCTAACTGTACATTGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGCGTCATTGGCGACAGAAGCTCGTTTCATTTGATTGGACCGTCGACCACGACCACGACAACGTCGGGCAATAGCAAGAGGAAGTTTTCTGCTAGAGGAGAAGAAGGGAGCTTGAAATGTGGAAGCACTAGTAAATGCCATTGTTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATAAAAGTACCTGCCATAAGTAACAAACTTGCAGATATTCCTTCCGATGATTATTCATGGAGAAAATATGGGCAGAAGCCAATTAAGGGTTCTCCTCATCCAAGGGGTTACTACAAATGCAGCAGCATAAGAGGTTGTCCGGCAAGAAAGCATGTCGAGCGGTGCTTAGAAGACCCGTCGATGCTTATTGTAACGTACGAAGGAGAACATAGTCACCCGAAAATGTTGACGCAATCTGCACACACTTAG 1032 39.44 MEEVEEATKSAIESCHGVLNLLLQPPPSPPHQHHFKNLMVETKEAVFKFKKVISLLNSDFSHPRFRNFNKIPLPLPQNSLLDSPNYTLHPPNKNLFNFPPGSNSKVSIFLGNPDLELSQNDKNTLHIPKQSPSLNFSFPHHHHHQQQQQQQSVLAHQKQMKQQAEMTFLRNNNGMNLNFDTSNCTLTMSSARSFISSLSMDGSVIGDRSSFHLIGPSTTTTTTSGNSKRKFSARGEEGSLKCGSTSKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSIRGCPARKHVERCLEDPSMLIVTYEGEHSHPKMLTQSAHT 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4242020 4244128 + MELO3C014305.2.1 Cme05g00464 327527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00464 343 Gene3D WRKY domain 262 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme05g00464 343 Pfam Plant zinc cluster domain 237 273 IPR018872 -
Cme05g00464 343 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme05g00464 343 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 2 343 - -
Cme05g00464 343 SMART WRKY_cls 275 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme05g00464 343 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 343 IPR044810 GO:0003700
Cme05g00464 343 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme05g00464 343 SUPERFAMILY WRKY DNA-binding domain 273 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g02020 Cme05g00464 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02020 Cme-Chr1:28771807 Cme05g00464 Cme-Chr5:4242020 6.15E-114 dispersed
Cme02g00670 Cme-Chr2:7982031 Cme05g00464 Cme-Chr5:4242020 6.95E-14 dispersed
Cme02g00671 Cme-Chr2:7982031 Cme05g00464 Cme-Chr5:4242020 6.95E-14 dispersed
Cme05g00464 Cme-Chr5:4242020 Cme11g00698 Cme-Chr11:8243822 4.92E-51 dispersed
Cme05g00464 Cme-Chr5:4242020 Cme08g00590 Cme-Chr8:3758983 7.86E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41329 PF03106 WRKY 5.90E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00464 - - csv:101214847 628.246