Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00473 ATGCAGGATTCACCAGTTTTCAACTTCATAAACAGTCTATCACCCATAAAGCCAGTTAAATCCATTCACATTACTCAAACATTCAACTCCATTTCTTTCCCTTCCCTTCCAGTTTTCACTTCCCCACCACAACACCATTTCAGTCCTCTCAAGTCCCCGAAAAGGCCGAATTTTTCGAACCCATCGAGATCCCCGCCTCCAGTTTCTAAAAATGAAGGAGGAGCGGTTATTATAATGGATCAGTTACTGGAGATTTTCGTGCCCGAAATTCCGACGGCCTCAACTCCAGTAATTCCGCCACAGGAAACGGTTGATTCCGATGCCGGCGAGGTTGTGGTATTTCGTTGTCCGATTAGCACTGAAGCTAGGGAGCAAGAAGATGAGGCCTTGTTTCAAAACGACTGCGTTTTGGATACAATAGAGGAAAACAAGCTTCTGTCTAACCTACAAAGCGGGAACATGCGGAGGAGATGCCTAGATTTCGAAATGGCGGGAAACCCCAATTCGGCGACGGTGGAGGCGAGGGCCGGCGACGCTTCAATCCCCGTTTCTTCTTCTTCTTCTTCTTCGTCATTGCGACGCACTCTGCCTGGTATCGGTTTGCACTTGAATTCTCTTGCAGCCACTTTGAAGAACTCCGATTCAGACAATCTGTGTTCCGATAGCCAGCCGAGTCTTCCCAGCTCCTCTGCTTCCATTTTTGCCTCAAATTCCACTCGAGATCAACTCTTGTTGGCTTCATCCACTCCTGATAGTGAAAACCCTCCTCAAGAATCTGCCAATCTGACTGGAGAAGAACTCAATCAGATCAACCCTAAAAAGAATTGGAAATTGATGGAAAATGCTGGAATTGGGGCGTGTAAACGTTGCAACTGTAAGAAATCTAGGTGCCTGAAGCTATATTGTGAATGCTTTGCTGCTGGCGTGTATTGCATTGAACCGTGTTCATGTCAAGACTGCTTCAACAAACCGATACATGAAGCGATGGTTCTTGAGACTCGCAGGCAGATTGAATCTCGCAATCCACTTGCATTTGCTCCTAAAGTGATCATGAACAGTGATTCGGTTTCTGAACTTGGGGATGACTCAAACAAAACTCCAGCTTCTGCTCGACATAAACGAGGATGCAACTGTAAGAAATCAGGTTGCTTGAAAAAATACTGCGAGTGTTATCAGGGCGGCGTTGGATGCTCCATCAACTGCAGATGTGAAGGTTGTAAAAATGCATTTGGGAGGAAAGACGAATCAGCTCTAATAGGAACCGAAATCGAACAAGAGGAAGAAGGCAGAGAACACTGCCAAAAAACCATAGATATACAGAGCGATGAAGATCAGCAGAACCCAAGCAATGCTGCTCCCTCGACACCACTAGGACCAAACAGATCATTGATTCCATTTCCATTCCAACTGAAGAGGAGACTTCCATCTTTCCTCAATGACGAGTCGTCCTCTAGATTGAGTGTTCGATTCAAACTCGAGAAGCACGGCATCACTCAAACAGAGCCCAAGTTTGAGAAAACACCCTGTGAGGATGTGACGCCAGAAACACTTTGTAATGGTTGCCCTTCTATCACAGACGTTAAGAGTGTTTCTCCCAACAGTAAGAGGGTTACTCTACCACCACCACAGGCCGATTTCAGGCCACTGCCCTCGACTAGAATCGGTCGGAAACTGATACTGCAGTCCATACCGTCTTTCCCTTCTCTCACTAATCAAAACTCAGGAATAAATGGACCCAGTGAACTGTAA 1749 46.08 MQDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPQHHFSPLKSPKRPNFSNPSRSPPPVSKNEGGAVIIMDQLLEIFVPEIPTASTPVIPPQETVDSDAGEVVVFRCPISTEAREQEDEALFQNDCVLDTIEENKLLSNLQSGNMRRRCLDFEMAGNPNSATVEARAGDASIPVSSSSSSSSLRRTLPGIGLHLNSLAATLKNSDSDNLCSDSQPSLPSSSASIFASNSTRDQLLLASSTPDSENPPQESANLTGEELNQINPKKNWKLMENAGIGACKRCNCKKSRCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEAMVLETRRQIESRNPLAFAPKVIMNSDSVSELGDDSNKTPASARHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDESALIGTEIEQEEEGREHCQKTIDIQSDEDQQNPSNAAPSTPLGPNRSLIPFPFQLKRRLPSFLNDESSSRLSVRFKLEKHGITQTEPKFEKTPCEDVTPETLCNGCPSITDVKSVSPNSKRVTLPPPQADFRPLPSTRIGRKLILQSIPSFPSLTNQNSGINGPSEL 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4351698 4356740 - MELO3C014295.2.1 Cme05g00473 327536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00473 582 MobiDBLite consensus disorder prediction 531 550 - -
Cme05g00473 582 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 121 571 IPR044522 GO:0003700
Cme05g00473 582 MobiDBLite consensus disorder prediction 440 457 - -
Cme05g00473 582 MobiDBLite consensus disorder prediction 44 72 - -
Cme05g00473 582 MobiDBLite consensus disorder prediction 246 267 - -
Cme05g00473 582 MobiDBLite consensus disorder prediction 440 463 - -
Cme05g00473 582 MobiDBLite consensus disorder prediction 44 58 - -
Cme05g00473 582 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 288 323 IPR005172 -
Cme05g00473 582 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 374 409 IPR005172 -
Cme05g00473 582 SMART CXC_2 285 326 IPR033467 -
Cme05g00473 582 SMART CXC_2 371 412 IPR033467 -
Cme05g00473 582 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 121 571 - -
Cme05g00473 582 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 65 - -
Cme05g00473 582 MobiDBLite consensus disorder prediction 172 192 - -
Cme05g00473 582 ProSiteProfiles CRC domain profile. 286 411 IPR005172 -
Cme05g00473 582 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 65 IPR044522 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00473 - - - csv:101211917 1038.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme05g00473 Cme06g00586 CCT
Cme05g00473 Cme06g00586 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00473 Cme-Chr5:4351698 Cme07g02086 Cme-Chr7:25614229 2.28E-07 dispersed
Cme02g01442 Cme-Chr2:21049451 Cme05g00473 Cme-Chr5:4351698 2.18E-31 transposed
Cme05g01983 Cme-Chr5:28358443 Cme05g00473 Cme-Chr5:4351698 2.77E-29 transposed
Cme05g00473 Cme-Chr5:4351698 Cme06g00586 Cme-Chr6:3762850 1.24E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010127 0 1 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41330 PF03638 TCR 9.00E-12 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00473 Cme_Chr05 FPKM 8.463034 10.476742 10.550993 12.84736 6.100187 5.600713 7.090378 33.194977 28.146006 34.032684