Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00479 ATGGGTAAGACAAGCAAATGGCTGAGGAACTTTCTGACAGGGAAGAAGGACAAAGAAAAGGAAAAATGGCCAAGTAATCAGAATTCTTCCGAGTATCCAGCCACCCCGATATCGATCCGACACAATCCTAGAGAGAAAAAACGATGGAGTTTTCGAAGATCTTCCGCTGCAGCTGCCGTGGCGGTATTGCCAAGAGACTCATTCCCATTTCCTCTTGAGATGGTGAGCACAACAATGCCTGTTGCTGCAATGGATTTAGAGTATGAGGAGCATAAGAAGCAAAGCTTAGCCATGGCAACAGCAAAAGCTGCAATGGATATGGATTATGAAGAGAAAAGGCAAGCAGTGGCCATGGTAGTGGCAAAAGCTGCTGCTGCTGATGCTGCTATGGCTGCTGCACAGGCAGCAGCTGCCGCAATCCAGCTAACTGAAGTAGCCTATGTGAAAGCTACTGCATTTGAGGAGGCTGCAGCCATCAAGATTCAATCAATTTTCCGGTCTTATTTGGCAAGAAAAGCACTCAGGGCATTGAGAGGTTTAGTGAAGTTGCAAGCACTTGCTAGGGGTCATCTTGTTAGAAAACAGGCCAAAGCTACACTCCGGTGTATGCAAGCGTTGATCACAGCCCAGGCTCGAGCTCGTGCACAACGGATAAAGATGATTGAAGCGACGAATAATCTTTCATATCAACGACAACCGTTTCTTGCTGAATCAGTTAATGAAGATCATTTTGGTTATGCCAATCATGCTGCTGAGGAAAATATTAAGATTGTGGAGATGGATCATGTAGAATACAAACGAGGCTCTAAGAACAGGACAAGCTATGAACAAGTCTTTGCCACACATCATCCACATCATGTCTCACAAGTACCATCAGCTCTAACCGACATCGACGCACGAGGTTGCAGCGGCCATTTCGAGGACTATTCCATCTGCACTGTACAGAGCAGTCCTCAAGATTATTTGGCCAAGTCTAAACCTGACCCCTCAAAAAGTAGTCCTATTGGTTTCTCCACTCGAGAATGTATCCAATCTATGTCCTTTGAGTATCCAATGTTCCCAAGTTACATGGCCAATACGGAATCTTCAAGAGCGAAAGCTCGGTCACAAAGTGCACCAAAGACAAGACCTGAATCATTTGAGAGGCAGCCAAGCAGAAGGAAGGCCTCAACTGAAGGAAAGAGCATCCCCAAGGCCATGCAAATACAGCGATCGGCTTCTCTCGTGGGTTGTGCCGCTCAAGACTTGCAGTATCCATTGTTGATGAGGCTTGACAAGTCCACAAGCTCTCTCAATAATAGTGAATGTGGCTCCACAAGTACAGTGCTCACAAATACCAACTACAGATCTCTTGTTACATGTGAAGTAAGTATCCAAATTAATGTTTAA 1389 45.43 MGKTSKWLRNFLTGKKDKEKEKWPSNQNSSEYPATPISIRHNPREKKRWSFRRSSAAAAVAVLPRDSFPFPLEMVSTTMPVAAMDLEYEEHKKQSLAMATAKAAMDMDYEEKRQAVAMVVAKAAAADAAMAAAQAAAAAIQLTEVAYVKATAFEEAAAIKIQSIFRSYLARKALRALRGLVKLQALARGHLVRKQAKATLRCMQALITAQARARAQRIKMIEATNNLSYQRQPFLAESVNEDHFGYANHAAEENIKIVEMDHVEYKRGSKNRTSYEQVFATHHPHHVSQVPSALTDIDARGCSGHFEDYSICTVQSSPQDYLAKSKPDPSKSSPIGFSTRECIQSMSFEYPMFPSYMANTESSRAKARSQSAPKTRPESFERQPSRRKASTEGKSIPKAMQIQRSASLVGCAAQDLQYPLLMRLDKSTSSLNNSECGSTSTVLTNTNYRSLVTCEVSIQINV 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4409200 4412116 - MELO3C014290.2.1 Cme05g00479 327542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00479 462 MobiDBLite consensus disorder prediction 10 25 - -
Cme05g00479 462 SMART iq_5 176 197 IPR000048 GO:0005515
Cme05g00479 462 SMART iq_5 153 175 IPR000048 GO:0005515
Cme05g00479 462 MobiDBLite consensus disorder prediction 379 393 - -
Cme05g00479 462 Gene3D - 153 205 - -
Cme05g00479 462 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 105 - -
Cme05g00479 462 Pfam IQ calmodulin-binding motif 156 175 IPR000048 GO:0005515
Cme05g00479 462 Pfam IQ calmodulin-binding motif 181 197 IPR000048 GO:0005515
Cme05g00479 462 ProSiteProfiles IQ motif profile. 154 182 IPR000048 GO:0005515
Cme05g00479 462 ProSiteProfiles IQ motif profile. 178 205 IPR000048 GO:0005515
Cme05g00479 462 Pfam Protein of unknown function (DUF4005) 326 393 IPR025064 -
Cme05g00479 462 PANTHER IQ-DOMAIN 5-RELATED 127 439 - -
Cme05g00479 462 MobiDBLite consensus disorder prediction 361 378 - -
Cme05g00479 462 MobiDBLite consensus disorder prediction 1 46 - -
Cme05g00479 462 MobiDBLite consensus disorder prediction 361 398 - -
Cme05g00479 462 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 127 439 - -
Cme05g00479 462 PANTHER IQ-DOMAIN 5-RELATED 1 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00479 - - - cmo:103491236 787.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme05g00479 Cme06g00579 CCT
Cme05g00479 Cme06g00579 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00479 Cme-Chr5:4409200 Cme05g01770 Cme-Chr5:26716694 3.68E-31 dispersed
Cme12g01757 Cme-Chr12:24242848 Cme05g00479 Cme-Chr5:4409200 1.62E-18 transposed
Cme05g00479 Cme-Chr5:4409200 Cme06g00579 Cme-Chr6:3718771 2.26E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g547 Blo01g00116 . . Bda08g00246 Bpe04g00817 Bpe14g01207 Bma04g00767 Bma05g01099 Cmo08g01104 Cmo17g00207 Cma06g01376 Cma14g01742 Car06g01191 Car14g01570 Sed12g0964 Cpe08g00280 Cpe03g01460 Bhi01g00766 Tan10g0796 Cmetu06g2556 Lac12g2258 Hepe05g1582 . Lcy11g1577 Cla06g00605 Cam06g0643 Cec06g0646 Cco06g0649 Clacu06g0630 Cmu06g0624 Cre06g1391 Cone14ag0869 . . . Lsi05g01633 Csa02g01132 Chy05g00390 Cme06g00579 Blo02g00523 . Bda11g00594 . Bpe05g00890 Bpe13g00591 . Bma06g01568 . Cmo06g01388 Cmo14g01779 Cma08g01130 Cma17g00215 Car08g01011 Car17g00192 Cpe12g00183 Cpe17g00159 . . . . . . . Cla05g00513 Cam05g0564 Cec05g0576 Cco05g0574 Clacu05g0561 Cmu05g0532 Cre05g0601 Lsi09g01300 Csa03g01295 Chy06g00550 Cme05g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012464 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 3 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00479 Cme_Chr05 FPKM 7.656881 7.862188 3.907613 2.817113 2.681328 2.848084 3.264488 6.484178 7.593547 7.432877