Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00483 ATGGGACAGACAAAAAATAGAGATGTAGAAAACGACGAAATTTATCCCATGATGATGGAGAGTCCTCAACTTCGGTGGGGATTCATCCGTAAAGTGTATGCCATCATCTCTATGCAATTGCTTCTCACCGCCGCGGTTGCTGCGGCCGTGGTTTTCATCCGTCCCATTCCAAATTTCTTCGTCAAAACCACTCCTGGTATCATCGCTTACATTGGCATCGTCATCTTCACTTTCATAGTTCTTTGTCCATTGTATGCTTATCATAGGCATCATCCATGGAATTTTATATTGCTTACTCTCTTTACAATTGGGATTGCCTTTTCTGTTGGAATAACTTGTGCATTCACCAAAGTTTTTGAAGGGCAGATTAGGTTTTAA 378 41.27 MGQTKNRDVENDEIYPMMMESPQLRWGFIRKVYAIISMQLLLTAAVAAAVVFIRPIPNFFVKTTPGIIAYIGIVIFTFIVLCPLYAYHRHHPWNFILLTLFTIGIAFSVGITCAFTKVFEGQIRF 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4465377 4466651 - MELO3C031180.2.1 Cme05g00483 327546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00483 125 PANTHER INHIBITOR OF APOPTOSIS-PROMOTING BAX1 PROTEIN 5 117 - -
Cme05g00483 125 Pfam Inhibitor of apoptosis-promoting Bax1 27 116 IPR006214 -
Cme05g00483 125 PANTHER BAX INHIBITOR-RELATED 5 117 IPR006214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00483 K24205 TMBIM, LFG; protein lifeguard - csv:101212404 227.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00483 Cme-Chr5:4465377 Cme11g01947 Cme-Chr11:27529767 5.99E-17 dispersed
Cme05g00483 Cme-Chr5:4465377 Cme05g00466 Cme-Chr5:4262390 1.81E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g551 . Blo12g00338 Bda03g00871 . Bpe04g00816 . Bma04g00766 . . Cmo17g00205 . . . . . . . . . . . . . . Cla06g00608 Cam06g0646 Cec06g0649 Cco06g0652 Clacu06g0633 Cmu06g0627 Cre06g1394 . . . . . Csa02g01129 Chy05g00387 . . . . . . . . . . . . . Cma17g00212 . Car17g00188 Cpe12g00180 . . . . . . . . . . . . . . . Lsi09g01297 . . Cme05g00483
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013077 0 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00483 Cme_Chr05 FPKM 50.60099 50.431763 107.343895 110.179337 50.920853 44.481178 48.61031 98.796738 93.008995 102.279465