Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00513 ATGGAACCCTGCATTGTCCGTGAGATCTCCGTGATGCGACGCCTCCAGCACCATCCCAACATCCTCAAAATCCATGAAGTTATGGCGACAAAAACGAAGATCTACCTCGTTGTCGATTACGCATCTGGTGGTGAACTATTTGCGAAACTCCTCCGCCGTGGTCGCTTGACGGAATCCACCGCTCGACGTTACTTTCAACAATTAGTCTCTGCTCTCCATTTCTGTCATCAAAACGGCGTTGCTCATCGCGACATCAAACCCCAAAATCTCCTCCTCGATGAAGAAGGTAACCTAAAGGTCTCTGACTTCGGTCTCTCCGCTTTACCGGAACAGATCAAAGACGGAATGCTTCACACCGCCTGTGGAACTCCGGCATACACCGCGCCAGAGGTTGTTTCCCGGCGAGGCTACGATGGGGCAAAAGCCGATGCGTGGTCCTGTGGTGTTATCCTCTTCGTTTTACTTTCCGGTCATCTTCCATTCAGCGATAACAACCTCGTTGCTATGTACAAGAAGGTTTATCGCCGGGAATATCAATTTCCCGATTCAATTTCAAAGCCAGCAAGACATTTGATCTTCCAATTACTGGATCCAAATCCAAATACGAGGTTGAGCATTGAGGCATTGATGCAACATTCGTGGTACAAGAAATCATTGCGATCAAAGCCCCAAATTAGCAACAGAAGCTTATTTGAATCATTGGGTAATTACAAATCTGAATTGGGTGTTTCTGGATTGAATGCATTTGATATAATTTCAATGTCTTCTGGTTTAGATCTGTCTGGGTTGTTTGAAACAACAGATTGTAATAAGAAGAGATTCACAACAGGGGTTGGTATGGAGAAAGTGGAAGAAAGGGTAAGAGAGATTGGTGGAGAATTGGGTTATAGAGTTGAGAAAGGGAAAAGTGGGGCAATTGGGTTAGGAAAAGGGGGAATGATTTTGGTGGTTGAAGCTTTGGAAATAACATCAAATCTGTTAATGGTGGAAGTGAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGAGATTTGAAAGCTAAGTTACAAGACATTGTTGATTCATGGCATACAAATGAGGCAATGTAA 1098 44.35 MEPCIVREISVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEEGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRLSIEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSELGVSGLNAFDIISMSSGLDLSGLFETTDCNKKRFTTGVGMEKVEERVREIGGELGYRVEKGKSGAIGLGKGGMILVVEALEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVDSWHTNEAM 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4722555 4724227 + MELO3C014269.2.1 Cme05g00513 327576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00513 365 Pfam NAF domain 246 300 IPR004041 GO:0007165
Cme05g00513 365 PANTHER SERINE/THREONINE KINASE 1 362 - -
Cme05g00513 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672|GO:0006468
Cme05g00513 365 CDD CIPK_C 247 349 - -
Cme05g00513 365 Gene3D Transferase(Phosphotransferase) domain 1 2 243 - -
Cme05g00513 365 SUPERFAMILY Protein kinase-like (PK-like) 4 224 IPR011009 -
Cme05g00513 365 Pfam Protein kinase domain 5 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00513 365 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 362 - -
Cme05g00513 365 SMART serkin_6 3 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00513 365 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00513 365 Gene3D Kinase associated domain 1, KA1 244 357 - -
Cme05g00513 365 ProSiteProfiles NAF domain profile. 241 265 IPR018451 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme05g00513 Cme06g00555 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00513 Cme-Chr5:4722555 Cme08g02122 Cme-Chr8:27131707 1.23E-112 dispersed
Cme05g00513 Cme-Chr5:4722555 Cme06g00555 Cme-Chr6:3506603 3.63E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64886 PF00069 Pkinase 3.10E-62 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00513 K12761 - csv:101215156 707.597