Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00516 ATGGAAGCAGTTGGCCTGAATATGCCCAACAATCAGTTCGTTAGCTTGAAGGAGACTGAGCTCTGCCTCGGTTTGCCCGGTGGCGGTGGCGGTGGTGGAGATCAGACCTCTCTCAAATCTTCTGGCAAGAGGGGGTTCTCTGAAACTGTTGATCTCAAACTTAACCTTCAGAGCAAGGACGGTGGAGGAGGTGGCGGTGTCGGTGTCGGGGTGGATCTCAATGAGAATGTTAAGAATGTTTCGACGAACGTGGATGGTGAGAAGAGCCTCTGCTCCAAGGATCCTGCCAAGCCACCCGCCAAAGCACAAGTTGTGGGATGGCCACCAGTTCGATCGTACAGGAAGAACGTGATGGCACAGAAGAACACAAGTGGCGGCGAAGGAGCGGAGAAGGGAAGCAGTGGCAGCTCAGCTGCCTTTGTGAAGGTTTGCATGGATGGTGCTCCATATCTCCGCAAGGTTGACCTGAAAATGTATCAGAGCTACCAAGAACTTTCTGATGCCTTGGCCAAGATGTTCAGCTCCTTCACTATGGGTGAATATGGTACACAAGGAATGATAGACTTCATGAATGAAAGGAAGTTGATGGATCTTCTCAATAGCTCTGAGTTTGTTCCTACTTATGAAGATAAAGATGGCGATTGGATGCTCGTCGGTGATGTCCCATGGGAAATGTTTGTGGATTCATGCAAGCGTTTGAGAATCATGAAAGGATCAGAAGCCATTGGCCTTGCCCCAAGAGCTATGGAGAAATGCAAAAGCAGAAGCTAG 771 49.55 MEAVGLNMPNNQFVSLKETELCLGLPGGGGGGGDQTSLKSSGKRGFSETVDLKLNLQSKDGGGGGGVGVGVDLNENVKNVSTNVDGEKSLCSKDPAKPPAKAQVVGWPPVRSYRKNVMAQKNTSGGEGAEKGSSGSSAAFVKVCMDGAPYLRKVDLKMYQSYQELSDALAKMFSSFTMGEYGTQGMIDFMNERKLMDLLNSSEFVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4800585 4802606 + MELO3C026762.2.1 Cme05g00516 327579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00516 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA14 11 249 - -
Cme05g00516 256 Pfam AUX/IAA family 18 247 IPR033389 -
Cme05g00516 256 Gene3D - 133 250 - -
Cme05g00516 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 249 IPR003311 GO:0005634|GO:0006355
Cme05g00516 256 SUPERFAMILY CAD & PB1 domains 134 237 - -
Cme05g00516 256 ProSiteProfiles PB1 domain profile. 138 238 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00516 K14484 IAA; auxin-responsive protein IAA - csv:101205299 461.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme05g00516 Cme06g00548 CCT
Cme05g00516 Cme06g00548 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01454 Cme-Chr2:21275701 Cme05g00516 Cme-Chr5:4800585 4.99E-75 dispersed
Cme05g00458 Cme-Chr5:4188175 Cme05g00516 Cme-Chr5:4800585 8.14E-61 dispersed
Cme05g00516 Cme-Chr5:4800585 Cme08g00701 Cme-Chr8:4679939 1.15E-64 dispersed
Cme05g00515 Cme-Chr5:4765761 Cme05g00516 Cme-Chr5:4800585 3.00E-23 tandem
Cme02g01422 Cme-Chr2:20536240 Cme05g00516 Cme-Chr5:4800585 1.13E-88 transposed
Cme05g00516 Cme-Chr5:4800585 Cme06g00548 Cme-Chr6:3441658 3.08E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g604 . Blo12g00354 . . Bpe04g00805 Bpe14g01226 . . Cmo08g01088 Cmo17g00186 Cma06g01344 Cma14g01774 Car06g01165 Car14g01596 . Cpe08g00306 . . . . . . . . Cla06g00625 Cam06g0664 Cec06g0668 Cco06g0674 Clacu06g0652 Cmu06g0645 Cre06g1413 . Cone3ag0696 . . Lsi05g01663 Csa02g01105 Chy05g00364 Cme06g00548 Blo02g00605 Blo07g00243 Bda11g00610 Bda13g00091 . Bpe13g00577 . . Sed02g1370 Cmo06g01355 Cmo14g01811 Cma08g01113 Cma17g00190 Car08g00996 Car17g00168 . . Bhi12g02259 Tan06g2466 Cmetu06g0764 . . . Lcy13g0327 Cla05g00490 Cam05g0534 Cec05g0546 Cco05g0546 Clacu05g0532 Cmu05g0504 Cre05g0572 Lsi09g01278 Csa03g01265 Chy06g00519 Cme05g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000184 9 5 7 6 9 5 10 5 6 6 4 5 11 6 6 10 5 9 3 5 6 6 6 6 6 6 6 7 6 3 190
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41334 PF02309 AUX_IAA 1.70E-83 CL0072 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00516 Cme_Chr05 FPKM 4.878232 5.84216 4.90013 5.107399 2.432154 2.468825 1.914289 4.508833 3.712268 3.844597