Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00518 ATGGCTCGGGACGGGCATGTAGTGCCGGTTGATCCACAGACGGCGCTTACTGTGAAGAAGAAGAAACAATCTTCTAGGAATTGGATTTTACTGGATTGTACGGGCCAAGGGACCGTCCTTGATGTCGATAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGTGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCACATAAAGGCGATCATTACTGCTGATGAGGTTTTGCTAAGAGATCCGACAGATGAACATATCATCCCTGTGGTTGAGGAGCTTCAGAGGCGACTGCCTCTTTCTAATGGCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGAGTGGCCAACAAGATGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAGGTAGCATTGGAAGCTATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACT 519 46.44 MARDGHVVPVDPQTALTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITADEVLLRDPTDEHIIPVVEELQRRLPLSNGFQFQVQGDGKEYQSGQQDGEAEEDDSPFEFRALEVALEAICSFLAARTTELET 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4841371 4843538 + MELO3C026764.2.1 Cme05g00518 327581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00518 173 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 173 IPR039204 -
Cme05g00518 173 Gene3D Magnesium transport protein CorA, transmembrane region 104 173 - -
Cme05g00518 173 Gene3D - 13 99 - -
Cme05g00518 173 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00518 K16075 MRS2, MFM1; magnesium transporter - csv:101203841 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00518 Cme-Chr5:4841371 Cme06g01215 Cme-Chr6:9770716 1.44E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g01722 . 1 447 MRS2 Gene Family AT1G16010 84.6 2.5e-206 714.9
Cme05g00459 . 35 322 MRS2 Gene Family AT1G16010 50.3 2.8e-72 269.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G64560 66.9 3.3e-106 382.1
Cme05g00518 . 1 173 MRS2 Gene Family AT5G64560 71.8 1.7e-62 236.9
Cme01g01979 . 1 101 MRS2 Gene Family AT5G64560 80.4 2.5e-37 153.3
Cme01g00132 . 1 495 MRS2 Gene Family AT3G19640 63.5 1.4e-154 543.1
Cme06g01215 . 59 443 MRS2 Gene Family AT3G58970 69.4 4.0e-140 495.0
Cme04g01722 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.1e-113 405.2
Cme03g01452 . 1 194 MRS2 Gene Family AT2G03620 66.5 3.6e-61 232.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G09690 64.0 7.7e-104 374.0
Cme04g01722 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.5e-78 288.1
Cme05g00518 . 1 172 MRS2 Gene Family AT5G09690 69.9 3.7e-58 222.2
Cme05g00459 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.3e-77 285.4
Cme05g00518 . 23 172 MRS2 Gene Family AT5G09720 68.2 9.3e-48 187.6
Cme04g01722 . 1 447 MRS2 Gene Family AT1G80900 83.0 1.2e-200 696.0
Cme03g01452 . 1 194 MRS2 Gene Family AT1G80900 52.8 8.5e-45 178.3
Cme12g00517 . 16 458 MRS2 Gene Family AT5G22830 68.8 4.1e-159 558.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00518 Cme_Chr05 FPKM 10.105491 10.169763 11.926266 13.138039 1.185939 0.594824 0.641574 0.0 0.0 0.2392