Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00538 ATGCCGTTTCCTACGACCTCAGACCAATACACCATCCTTACTCAGATCGGTGCTAGTCCCAACAGCGCCGTCTACTTGGCCAAATGCGACTCCCAAGACTCATCCACCTCCTCCACTGTCACCGTCGCCATCAAAATCATCGAAACCCCCCAAATCATATTTGACACCAACTTGTTAAACACTTCACTAACGCTCATTGACCACCCCAATATTGTTCGCCCGCATTGTTGTTTCTTCGCCGACGACAACCGTCTTTGGATCGTAATGCCCTACATGTCAGCCGGACCTTTACAATCCGTTCTCTCCCACAGTTTTCCCAGAGGTATGCCCGATCAATTCACCTCCATTCTTCTGTCCCAAGTTCTTCAAGCTTTGGTTTATCTTCACCGAATGGGGTTTGTTCATAAAGCCATTAAACCAAGTAATATCTTCTTTGATTCACAAGGCACTGTTAAGCTATCTGTTTTCGACCTTATGATCTCTGCCGATAATAAAATTGATCGTGATTCTTCAATTCCTTACTGGGTTCCACCCGATGATGAATATAGTTTCAAATCAGATATTTGGGAAGTTGGTGTTTTAGCTATGGAAGTTACTTGGGGTGGTCCTCCAATTATAGACCCAAGAATTCTTGAATCACAAGTTTTGAATATCTCAAGAAGGTTTCCTTACGAATTGAAAACAGAGACGGGTAGAAGAAATAGTGGTGACAGAAGAATATTTGGAGATGCTGTTAAGGAGTTTGTGAAAACTTGCCTGTTAAAAGATCGATTGGAACGGCCGACAGCGGCGAGTTTGTTGGATCATCCATTTGTGGTGAAAGGGGAAAATGCGAATAATTTCTTGTTCAAGAGTATTCCAAAAGGAGTGATTGAAATTGATAGAAGATTTCAACTAGAAAAGGAAAGAATCATTGGGATTATGAATAATGATGAGGGATTGAAGAATCAAAGTGAGAAGATAACGAAGATTAGTGGATGGGTTTATAATGATTTTTTGTTTGAACTTGAACCTGATGGCGAATCATTAGGGAAAAGAGTTCGGTTTGGTGGTGAAACCATAAGAGAATTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGGAGAGAGCAGCACGAAAGTTGATGATACGCCATCTTTACTTGAAATAATAGAGAAAAATTTGATGAGTGGTGGTGATGGTAGTGGTGAATCAAGCAAGAAGAAGAAGAAGAAGAAGAAGATTGTTGATCAAGAAAGTTTAGTGAAAATGTTGACTTCAGTGTTAGGTAATATTGATGCACAAAGGGAGATGGTTTCGATGCTGATAAATCATGTTGGTTATTTGAGTGAAAAACAGTCGGAAATGAGTAATGAAATCAAAAGATTAGAGACAGAATTGAAAGCTGAGAAAGAACAGTACTTTCAACTAGAGTTAGAATATGAATTTCTAAAGCTCAAAGTTCCTGATTCTGACGATGATCAAAAAGAATATCCTTCTTCTTCTTCTTCTTCTGAACAAATAAACACTATGTAA 1512 39.02 MPFPTTSDQYTILTQIGASPNSAVYLAKCDSQDSSTSSTVTVAIKIIETPQIIFDTNLLNTSLTLIDHPNIVRPHCCFFADDNRLWIVMPYMSAGPLQSVLSHSFPRGMPDQFTSILLSQVLQALVYLHRMGFVHKAIKPSNIFFDSQGTVKLSVFDLMISADNKIDRDSSIPYWVPPDDEYSFKSDIWEVGVLAMEVTWGGPPIIDPRILESQVLNISRRFPYELKTETGRRNSGDRRIFGDAVKEFVKTCLLKDRLERPTAASLLDHPFVVKGENANNFLFKSIPKGVIEIDRRFQLEKERIIGIMNNDEGLKNQSEKITKISGWVYNDFLFELEPDGESLGKRVRFGGETIREFEKEEEEEEEGESSTKVDDTPSLLEIIEKNLMSGGDGSGESSKKKKKKKKIVDQESLVKMLTSVLGNIDAQREMVSMLINHVGYLSEKQSEMSNEIKRLETELKAEKEQYFQLELEYEFLKLKVPDSDDDQKEYPSSSSSSEQINTM 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5213001 5214578 + MELO3C026784.2.1 Cme05g00538 327601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00538 503 Gene3D Transferase(Phosphotransferase) domain 1 6 294 - -
Cme05g00538 503 Coils Coil 445 479 - -
Cme05g00538 503 MobiDBLite consensus disorder prediction 482 503 - -
Cme05g00538 503 ProSiteProfiles Protein kinase domain profile. 10 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00538 503 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 487 - -
Cme05g00538 503 Pfam Protein kinase domain 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00538 503 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 3 487 - -
Cme05g00538 503 MobiDBLite consensus disorder prediction 356 375 - -
Cme05g00538 503 SUPERFAMILY Protein kinase-like (PK-like) 7 278 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00538 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - cpep:111806976 451.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme05g00538 Cme06g00521 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00538 Cme-Chr5:5213001 Cme09g00387 Cme-Chr9:3475453 9.35E-49 dispersed
Cme05g00538 Cme-Chr5:5213001 Cme06g00521 Cme-Chr6:3294460 7.71E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014569 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 0 1 0 1 0 1 1 3 1 0 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64887 PF00069 Pkinase 4.50E-31 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00538 Cme_Chr05 FPKM 14.65203 15.310473 37.969788 40.112926 22.863573 23.934914 27.710125 28.596445 30.85581 31.920017