Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00550 ATGAACAGCCCTTTACAAGTTTTCAATTCTTACGACCGCCAGTCCGATCTCGAAGCTTTCCACAGTACCAAGTTGGGAGTAAAAGGTTTGGCGGATGCCGGCGTTTCCCAACTCCCAAGAATCTTCTGCCACGACAATCAATCGGCGGCCTCGCTAATCTCTTCCCCTGCAGCTGCGGCGGCGGAGAAATTAGCCGGCGAAACAGAGGCCAAGAATCTAACAATCCCTGTTATCGATCTACAAGACTCTCACAAAAACAGAGCACAAATAATAAACGAAATCAAAGACGCATGCAAGAATTGGGGATTCTTTCAAATCCTCAACCATGGGGTTCCGTTAAGCGTAATGAAAGAGATGATGAACGGAATCCGGCGGTTTCACGAGCAAGGAGACGAAATGAAGAAGGATCTGTACTCGAGAGATTTTCAGAGGAAGATACTTTTCAATACGAATTTCGATTTGTTCAAAGGGGTGTCGACGAATTGGAGGGACACGTTGACGGTGGTGGTGGCACCGCGTGGGGCAGAGGCGGAGGAGATACCGGAAGTATCGAGGGAGGCGGTGGTGGAATTTTCGAGAAGGGTGAAGGAATTGGGAGATATTTTACTTGAATTTTTAGGGGAGGGATTGGGAGTGGGGAGCAATCGGTTGAAGGAAATGGGTTGTGGAGATGGAATGGTAATGTTCTGTCATTACTATCCGGCGTGTCCGCAACCGGAGCTGACATGGGGAACCACAGATCATACGGATAGTAGTTTTTTGACGGTGCTTTTGCAGGATGAGTTGGGTGGACTTCAAGTCCGCCATGGGGATCGTTGGGTTGATGTTCATCCCATCGAAGGAGCTTTTGTCGTTAACATTGGCGATTTCATGCAGATGGTGTCAAATGATAGGTTCATAAGTGTGAACCATAGGGTTCTAGCAAACAAGAAAGGGCCAAGAATCTCAGTGGCAAGTTTCTTTAGGTGCAATCTTCCACCAGAAAATGGTTTAGTTTTTGGACCTCTTAAGGAGTTAAGATCAGAGGAAAACCCAGACATTTATAAAGAAACTTCCATCAAAGACTATGTGGCTCATTACTATAACAAAGGCCTCAATGGCATCTCTGCTCTTGAACACTTCAAACTTTGA 1131 46.33 MNSPLQVFNSYDRQSDLEAFHSTKLGVKGLADAGVSQLPRIFCHDNQSAASLISSPAAAAAEKLAGETEAKNLTIPVIDLQDSHKNRAQIINEIKDACKNWGFFQILNHGVPLSVMKEMMNGIRRFHEQGDEMKKDLYSRDFQRKILFNTNFDLFKGVSTNWRDTLTVVVAPRGAEAEEIPEVSREAVVEFSRRVKELGDILLEFLGEGLGVGSNRLKEMGCGDGMVMFCHYYPACPQPELTWGTTDHTDSSFLTVLLQDELGGLQVRHGDRWVDVHPIEGAFVVNIGDFMQMVSNDRFISVNHRVLANKKGPRISVASFFRCNLPPENGLVFGPLKELRSEENPDIYKETSIKDYVAHYYNKGLNGISALEHFKL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5362169 5364957 + MELO3C022978.2.1 Cme05g00550 327613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00550 376 SUPERFAMILY Clavaminate synthase-like 24 366 - -
Cme05g00550 376 Pfam 2OG-Fe(II) oxygenase superfamily 227 321 IPR044861 -
Cme05g00550 376 Gene3D - 17 359 IPR027443 -
Cme05g00550 376 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 7 375 - -
Cme05g00550 376 Pfam non-haem dioxygenase in morphine synthesis N-terminal 75 167 IPR026992 -
Cme05g00550 376 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 1-LIKE 7 375 - -
Cme05g00550 376 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 325 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00550 - - - csv:101220285 681.019
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00550 Cme-Chr5:5362169 Cme06g00509 Cme-Chr6:3208838 3.63E-130 dispersed
Cme07g01252 Cme-Chr7:17349409 Cme05g00550 Cme-Chr5:5362169 6.04E-15 transposed
Cme10g01612 Cme-Chr10:21390057 Cme05g00550 Cme-Chr5:5362169 4.35E-113 transposed
Cme05g00550 Cme-Chr5:5362169 Cme06g00507 Cme-Chr6:3193101 1.37E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g654 . . . . . . . . . . . . . . . Cpe08g00326 . . . . . . . . Cla06g00651 Cam06g0697 Cec06g0700 Cco06g0709 Clacu06g0683 Cmu06g0674 Cre06g1443 . . . . . . . . . Blo07g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01229 . Cme05g00550
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00550 Cme_Chr05 FPKM 4.696078 4.67049 8.912821 6.750377 1.534819 1.476633 1.692286 16.618773 13.012904 14.439711