Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00553 ATGACGATGAACCCTTGTTTCTTACAAGTGTTTTTTACTAGGTTTAAGCCGCACATCCTCATAATTTTTACTCAAGTTGGCTACACGTTTTTGTATTTTTTCATTGATGCTTCCTTCAAGCATGGCATGAATCCTCACGTTCACATCACTTATCGACAAATTCTTGCTACCATCACCTTGCTTCCCTTTGCTTATTTTCTCGAAAGGAAATTAAGACCAAGGATCACATTGGCGCTATTATTAGAGATTTTTTTTCTTTCTCTAATGGGGGTGACTTTGAGTATCAACACATACTTTGCAAGTTTGAAATACACATCTCCCACTTTTATCACGTCAATGCTCAACACTGTAGCTGGCTTGACATTTGTTATTGCGGTTATGTTCAGATTGGAGGTTGTGGAGTTTGAAAATCCAAAAGGAATAGCAAAAGTGATGGGGACATTGGTTTCACTAGGTGGTGTGTTGATAATGACATTCTATAAAGGACCTATAATTAAAAGTGTATGCCATCCTCTCATCCATATTCAACACAAAGCTACATATTATCTCCATGAGGATTGGCTCAAGGGTTCACTTCTTACTGTTTCAAGCTGCCTTTCCTGGGCCATTTCCTACATTTTGCAGGCATTTACGTTAAAGCGATACCCAGCACCGTTATCATTAACAACATGGATGAACATGTTTGGAGCAGCACAAACAGCTTTTTACACAGTGTTGACACAACGCAAGGCAGGAGTTTGGAATCTTGGATTAAACATCGACCTTTGGGCCATTATCTATGCAGGAATTATGTGCTCAGGTATTATAATATATATACAACTATGGTGCACAGAAGAAAAAGGGCCTGTTTTTGTCACAATGTACAATCCACTTTGTTCCATTTTGGTTGCTCTCTTAGCTTACTTTGTTTTTGGACAAAAGCTTTACTTTGGCAGCATTGTTGGTGGAGTTATCGTCATCATAGGGCTGTATTTGCTGTTATGGGGCAAACAAGATGATGACCAAAAGCTTCAAAATAAGTCACCTTTGGAATCTGATTCCCTCCATCAAACTTCCAAACAACCTCATTTAATTCCAAATTAG 1083 38.5 MTMNPCFLQVFFTRFKPHILIIFTQVGYTFLYFFIDASFKHGMNPHVHITYRQILATITLLPFAYFLERKLRPRITLALLLEIFFLSLMGVTLSINTYFASLKYTSPTFITSMLNTVAGLTFVIAVMFRLEVVEFENPKGIAKVMGTLVSLGGVLIMTFYKGPIIKSVCHPLIHIQHKATYYLHEDWLKGSLLTVSSCLSWAISYILQAFTLKRYPAPLSLTTWMNMFGAAQTAFYTVLTQRKAGVWNLGLNIDLWAIIYAGIMCSGIIIYIQLWCTEEKGPVFVTMYNPLCSILVALLAYFVFGQKLYFGSIVGGVIVIIGLYLLLWGKQDDDQKLQNKSPLESDSLHQTSKQPHLIPN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5374809 5378442 + MELO3C022980.2.1 Cme05g00553 327616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00553 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Cme05g00553 360 PANTHER WAT1-RELATED PROTEIN 15 351 IPR030184 GO:0016021|GO:0022857
Cme05g00553 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 331 - -
Cme05g00553 360 Pfam EamA-like transporter family 18 158 IPR000620 GO:0016020|GO:0016021
Cme05g00553 360 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
Cme05g00553 360 PANTHER WAT1-RELATED PROTEIN 15 351 - -
Cme05g00553 360 MobiDBLite consensus disorder prediction 341 360 - -
Cme05g00553 360 MobiDBLite consensus disorder prediction 338 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00553 - - - csv:101221302 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00553 Cme-Chr5:5374809 Cme07g00859 Cme-Chr7:8550197 6.26E-86 dispersed
Cme05g00553 Cme-Chr5:5374809 Cme03g01914 Cme-Chr3:27258768 3.10E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g671 . Blo12g00364 Bda03g00845 . Bpe04g00799 . Bma04g00745 . Cmo08g01064 . . . . . . . . . . . . . . . Cla06g00654 Cam06g0699 Cec06g0704 Cco06g0712 Clacu06g0686 Cmu06g0677 Cre06g1446 . Cone15ag0154 . . . Csa02g01074 Chy05g00334 . . . . . . . . . Sed09g0697 . . Cma08g01089 Cma17g00170 Car08g00964 . Cpe12g00146 Cpe17g00189 Bhi12g01633 Tan06g2422 Cmetu05g0191 . . . Lcy13g0364 . . . . . . . Lsi09g01243 . . Cme05g00553
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003879 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 5 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00553 Cme_Chr05 FPKM 101.647621 112.014526 1.947728 2.245366 430.617981 337.169769 408.596832 0.298174 0.173456 0.284093