Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00557 ATGAATTCTTCTTTCTTTCACTCCCAAAACTCCGATCTCTCACCCCAATCTTCCTTTAGCTCCTTTGAATCCCTCCCATGGGAAGGTTTTCAAATCAACGATGACTCTCTCCCATTCAACCAGAATGATTCCGGCGAAATGCTTCTTCACAGCTTAATCTCCGAGGCCTATGTGGACCCACCGGAGAATTCCCCTCGCCAGGTTCCCATCAAAGACGAGGAGGTCGATTCGCTCGGAGAAGAAGACCCCCACAAGAGAAAGTCCTACAGAGGGGTCCGCCGACGACCCTGGGGAAAATTCGCGGCGGAGATACGAGACTCAACCCGACATGGGGTCAGGGTTTGGCTCGGGACATTCGACAGTGCCGAGGCGGCCGCTTTGGCCTACGATCAAGCAGCTTTTTCGATGAGAGGTTCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTGAAGGAGATGGAGATGATCAACTCCGCGGCTGAGGGGGGCGACGGTGGATCTCCGGTGGTGGCTTTGAAGAGAAAACATTCGATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGATAGATGGGATTGGGAAGAGTGAGAATAATGTGGTTGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTTTGGAGTCATCCGAGAATGTCCGACCGTGGTAG 687 51.09 MNSSFFHSQNSDLSPQSSFSSFESLPWEGFQINDDSLPFNQNDSGEMLLHSLISEAYVDPPENSPRQVPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSAAEGGDGGSPVVALKRKHSMRKKFTRRKSKEIDGIGKSENNVVVLEDLGSDYLEELLESSENVRPW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5448371 5449587 + MELO3C022985.2.1 Cme05g00557 327620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00557 228 MobiDBLite consensus disorder prediction 66 87 - -
Cme05g00557 228 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Cme05g00557 228 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Cme05g00557 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 32 221 - -
Cme05g00557 228 MobiDBLite consensus disorder prediction 58 91 - -
Cme05g00557 228 MobiDBLite consensus disorder prediction 1 21 - -
Cme05g00557 228 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Cme05g00557 228 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Cme05g00557 228 PANTHER DNA-BINDING DOMAIN 32 221 IPR044808 GO:0003700|GO:0009873
Cme05g00557 228 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Cme05g00557 228 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Cme05g00557 228 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Cme05g00557 228 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01023 Cme-Chr4:13957162 Cme05g00557 Cme-Chr5:5448371 6.96E-60 dispersed
Cme05g00557 Cme-Chr5:5448371 Cme08g00254 Cme-Chr8:1650699 9.44E-36 dispersed
Cme05g00557 Cme-Chr5:5448371 Cme06g00500 Cme-Chr6:3151318 4.12E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41338 PF00847 AP2 7.70E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00557 K14516 - csv:101206564 385.571