Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00564 ATGAGTCGACAAGTTGGAGTGCTAAACGCACTCGATCTTGCAAAAACCCAATGGTACCATTTCACTGCAATCATCATCGCTGGAATGGGTTTCTTCACCGACGCTTACGATCTCTTCTGTATCTCCATCGTCACTAAACTCCTCGGCCGAATCTATTACCATATTCCAAATTCCCCCAAACCCGGCTCCCTCCCTCCCAACATCGCTGCCGCCGTCAACGGCGTCGCCTTCTGCGGCACCCTTTCCGGCCAACTCTTCTTCGGCTGGCTCGGCGACAAGCTCGGCCGTAAAAAAGTCTACGGCATTACCCTCATTCTCATGGTCGTTTGCTCCATCGCCTCCGGCCTCTCCTTCAGCCACTCCTCAAAATCCGTAATTGCCACACTTTGTTTCTTTCGTTTCTGGCTCGGCTTTGGCATTGGCGGCGACTACCCTCTCTCCGCCACCATCATGTCCGAATACGCCAACAAAAAAACCCGCGGCGCATTCATCGCCGCTGTCTTTGCAATGCAAGGGTTTGGAATCTTAGGTGGAGGAATCGTCGCTTTAATCGTCTCTGCCGCTTTCAACAACCGCTTCCCAGCACCACCGTACATGGACAATCCCAACCGCCCCACCATACCGGAGGCCGATTATGTATGGCGAATCGTTCTAATGTTCGGCGCAATTCCGGCCGCATTAACATATTACTGGCGGATGAAAATGCCGGAGACGGCGAGATACACTGCCTTAGTTGCTCAAAACGCAAAACAAGCAGCGGCGGATATGTCGAGAGTGCTGCAAGTTGATCTCGAATTAAACGACCACGAAAAGAATTTCACGACAGAATCACATGAAATTAATCAAAACCGTTTCGGTTTATTCTCACGCGAATTCGCCAAACGCCATGGACTCCATTTATTAGGGACCACCACCACATGGTTTCTTTTAGACATAGCCTTTTACAGTCAAAACCTCTTCCAGAAAGACATTTTTACCGCCATTGAATGGCTTCCATCGGCGGCGACAATGAGCGAATTAGAAGAATGTTTCAAAATCGCAAAAGCTCAGACATTAATCGCACTATGCGGGACAGTTCCCGGTTACTGGTTCACGGTGGCGCTAATTGATTACTTGGGAAGATTTTTCATTCAATTGATGGGATTTATAATGATGACGATCTTCATGTTTGCTCTGGCGTTTCCTTACAATCATTGGAAGGAGAAGCCTCACAGAATTGGGTTTGTTGTAATGTATTCGTTGACATTTTTCTTTGCCAATTTTGGGCCGAATTCGACGACGTTTATAGTGCCGGCGGAGATATTTCCGGCTAGGTTGAGGTCGACTTGTCATGGGATATCGGCGGCGGCGGGGAAAGCAGGGGCGATAGTGGGGGCGTTTGGGTTTTTGTATGCGGCGCAGAGTAAGGATCCGAAATTGACGGATCCGGGTTACCCGACGGGGATCGGAGTAAAGAATGCTTTGATTTTGTTGGGATGTGTGAATTTTTGTGGAGCATTGTTTACTTTGTTGGTGCCGGAATCCAAAGGAAAGTCGTTGGAGGAGCTGACTGGGGAGAATGAAGACGAGAACATGAATGGAAATACAAATATAGTTAGGGATGTAAATGTTTAA 1614 48.33 MSRQVGVLNALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHIPNSPKPGSLPPNIAAAVNGVAFCGTLSGQLFFGWLGDKLGRKKVYGITLILMVVCSIASGLSFSHSSKSVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIVALIVSAAFNNRFPAPPYMDNPNRPTIPEADYVWRIVLMFGAIPAALTYYWRMKMPETARYTALVAQNAKQAAADMSRVLQVDLELNDHEKNFTTESHEINQNRFGLFSREFAKRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPSAATMSELEECFKIAKAQTLIALCGTVPGYWFTVALIDYLGRFFIQLMGFIMMTIFMFALAFPYNHWKEKPHRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPKLTDPGYPTGIGVKNALILLGCVNFCGALFTLLVPESKGKSLEELTGENEDENMNGNTNIVRDVNV 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5659701 5661314 + MELO3C022994.2.1 Cme05g00564 327627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00564 537 MobiDBLite consensus disorder prediction 517 537 - -
Cme05g00564 537 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Cme05g00564 537 Gene3D MFS general substrate transporter like domains 274 534 IPR036259 -
Cme05g00564 537 MobiDBLite consensus disorder prediction 522 537 - -
Cme05g00564 537 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 529 - -
Cme05g00564 537 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 1 529 - -
Cme05g00564 537 TIGRFAM 2A0109: phosphate:H+ symporter 10 519 IPR004738 GO:0005315|GO:0006817|GO:0016021
Cme05g00564 537 CDD MFS_PhT 24 509 - -
Cme05g00564 537 Pfam Sugar (and other) transporter 25 516 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cme05g00564 537 SUPERFAMILY MFS general substrate transporter 11 516 IPR036259 -
Cme05g00564 537 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 510 IPR020846 GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme05g00564 Cme06g00498 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00725 Cme-Chr3:13193358 Cme05g00564 Cme-Chr5:5659701 0 dispersed
Cme05g00564 Cme-Chr5:5659701 Cme06g00498 Cme-Chr6:3137502 0 dispersed
Cme06g01069 Cme-Chr6:7842339 Cme05g00564 Cme-Chr5:5659701 0 transposed
Cme07g00027 Cme-Chr7:205596 Cme05g00564 Cme-Chr5:5659701 2.43E-176 transposed
Cme04g00976 Cme-Chr4:13173820 Cme05g00564 Cme-Chr5:5659701 0 wgd
Cme05g00564 Cme-Chr5:5659701 Cme06g00497 Cme-Chr6:3123150 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00564 K08176 - csv:101212412 1009.98