Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00565 ATGGATGGTGGAAGCTCTGAATCCCCAGATATGGGTTGTAACAAGACCATAGTATGGTTTCGTAGAGACCTCAGGATTGAGGACAACCCTGCTTTAGCTGCTGCTGCTAGGAATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAAGAGGGACAATTCTATCCTGGTCGGGTATCGAGGTGGTGGTTGAAGCAATCCCTTGCCCATTTGAAACAGTCTCTTAAATCACTTGGTGCTGACCTAGTGCTGATGAAAACTCAGAGTACTATTTTCTCTCTTCTGGAGTGTATCAATGCTACTGGGGCAACAAAAGTAGCATTTAACTGTCTCTACGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAAAACTAGTTGAACTCGAAATTTCTGTGCAGAGCTACAATGCAGATCTTTTATATGAGCCATGGGACGTATATGATGAAAATGGGAATGCTTTTACGACCTTCAAAGAATATTGGGATAAATGTCATCTTTTGCAAAAGGAGTTGGTTTCAACTCTCCCTCCATGGAAACTACAGCAGGCTGGAGGAATGGTGGGAAGTTGTTCTATTGAGGAACTAGGTCTTGAAGATGAATCAGAAAAATCTAGCAATGCATTACTAGCTAGAGCTTGGTCTCCAGGCTGGAGCAACGCTGATAAGGCTTTGGCGGAATTTGTAGAAAATCATCTGCTAGAATATGCAAAAAATAGGCAACATCTTGGTGGTACCTCCACATCCCTACTGTCCCCGTACCTACATTTTGGGGAAGTAAGCGTTGGTAAGGTTTTCCAAAAAGTGAGATTGAAACAGATATTGTGGGCAAGAGAGGGAAATGCTTCAGGGGAACAAAGCGCAGAACTGTTTCTCAGGGCTATAGGGCTCAGAGAGTATTCTCGTTATATATGTTTCAACTTTCCATTCACCCATGAGAGATCATTGCTAAGCAGTCTGAAGTTCTTTCCTTGGCATGCTAGCCAGGATAACTTTAAGGCTTGGCGGCTGGGTCGAACTGGTTACCCATTGGTTGATGCAGGAATGAGAGAGCTTTGGGCAACAGGATGGATACACAACAGAATTAGAGTGATTGTTTCTTGCTTTGCAGTTAAAGTTTTGCTTCTTCCCTGGAAATGGGGAATGAAGTATTTTTGGGACACTCTTTTAGATGCAGATTTAGAAAGTGATATCCTTGGTTGGCAATATATTTCTGGGAGTTTGCCTGACGGCCATGAGCTTGAGAGATTGGACGATCCACAGATTCAAGGATCCAAGTATGATCCAGATGGAGAATATATTAGGCATTGGCTGCCTGAGCTGGCACGAATGCCAACTGAATGGATTCATCACCCTTGGGATGCACCTCAGACTGTCCTACAAGCTTCAGGAGTTGAGTTAGGTTTGAACTATCCGACACCGATAGTTGAGTTAGATTTGGCTGCTAATCGATTGACAGAAGCCATAATCAAAATGCGGGAAATTGAAGCAGCTGCTGGGGCAAACTCAAATGGTACAAATGAAGTTGTTATGGATAATGCAGATAGGATTCAATCTGTAGGTACTACAAATGTTGCTGCAGCAGCAAAAACATGTGCTACTAATTCTTCTAATGACCAGAAGGTACCAACAATCCATAATTCAAAGGTTAGTAATAATCCATTGAGTAGGAAACGGTCTAAAGCCAAGGAAGAGAAAGGAGAATTTCAGTATAATATTCGCAACAACGTACAAAATGAAGCTGGGACCTCAAAATTTGATGATGATTTATGCTCTACTGCTGAATCTTCATCATCTAAGAAACCATCCACCAGTAGAACTTCCTTTTCTGTTCCACAGTTTTGTTCCTCATCAAAAGAGCTGCCACAGTCATCTGAAGAACATACTGATAGATGA 1902 42.06 MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLYDPISLVRDHNIKEKLVELEISVQSYNADLLYEPWDVYDENGNAFTTFKEYWDKCHLLQKELVSTLPPWKLQQAGGMVGSCSIEELGLEDESEKSSNALLARAWSPGWSNADKALAEFVENHLLEYAKNRQHLGGTSTSLLSPYLHFGEVSVGKVFQKVRLKQILWAREGNASGEQSAELFLRAIGLREYSRYICFNFPFTHERSLLSSLKFFPWHASQDNFKAWRLGRTGYPLVDAGMRELWATGWIHNRIRVIVSCFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTEWIHHPWDAPQTVLQASGVELGLNYPTPIVELDLAANRLTEAIIKMREIEAAAGANSNGTNEVVMDNADRIQSVGTTNVAAAAKTCATNSSNDQKVPTIHNSKVSNNPLSRKRSKAKEEKGEFQYNIRNNVQNEAGTSKFDDDLCSTAESSSSKKPSTSRTSFSVPQFCSSSKELPQSSEEHTDR 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5666014 5670839 - MELO3C022995.2.1 Cme05g00565 327628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00565 633 Pfam FAD binding domain of DNA photolyase 293 490 IPR005101 -
Cme05g00565 633 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 14 143 IPR006050 -
Cme05g00565 633 Gene3D HUPs 17 216 IPR014729 -
Cme05g00565 633 PANTHER CRYPTOCHROME 2B APOPROTEIN 11 598 - -
Cme05g00565 633 ProSitePatterns DNA photolyases class 1 signature 1. 342 354 IPR018394 -
Cme05g00565 633 PANTHER CRYPTOCHROME 11 598 IPR002081 -
Cme05g00565 633 MobiDBLite consensus disorder prediction 573 624 - -
Cme05g00565 633 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 15 491 IPR014134 GO:0009785|GO:0009882
Cme05g00565 633 MobiDBLite consensus disorder prediction 536 633 - -
Cme05g00565 633 Gene3D - 143 303 - -
Cme05g00565 633 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 203 498 IPR036134 -
Cme05g00565 633 MobiDBLite consensus disorder prediction 536 557 - -
Cme05g00565 633 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 16 187 IPR036155 -
Cme05g00565 633 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 311 511 - -
Cme05g00565 633 PRINTS DNA photolyase signature 342 358 IPR002081 -
Cme05g00565 633 PRINTS DNA photolyase signature 362 380 IPR002081 -
Cme05g00565 633 Pfam DNA photolyase 16 169 IPR006050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00565 K12119 CRY2; cryptochrome 2 - cmo:103499419 1296.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02633 Cme-Chr1:33854940 Cme05g00565 Cme-Chr5:5666014 2.80E-46 dispersed
Cme04g00288 Cme-Chr4:2265520 Cme05g00565 Cme-Chr5:5666014 0 dispersed
Cme04g00355 Cme-Chr4:2802205 Cme05g00565 Cme-Chr5:5666014 5.25E-27 dispersed
Cme05g00565 Cme-Chr5:5666014 Cme10g01482 Cme-Chr10:18464050 1.38E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00565 Cme_Chr05 FPKM 4.003945 2.832642 15.311231 15.21432 3.184051 2.488158 4.060503 1.071074 0.0 0.0