Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00575 ATGGAAGCTACTAGGTGTTGGTTTAATAAGTTTAGATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATCCATCAAGGGCACCAACTAGTGAAGATGTACCTTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTATATTGAAAATCATTACAAGAAACAGATGAAGAGCTTGGAAGAAAGGAGGGAGAGGCGTCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTGAAGCATCTGGAGAAGAAGGAAACAGAGTATATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGTCATGTATATGCCATGAAGAAGCTTAAAAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAACCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAGGAGTATTTATATCTTATCATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGAAAAGATACTCTAACTGAAGATGAGGCTCGGTTTTATGTTGGCGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAACTATATTCATAGAGATATCAAGCCTGATAACTTACTTCTTGACAAGGATGGCCATATGAAATTATCGGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCTCTTCAGAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAACAGGAACAACTACAGCATTGGCAAAGAAATAGGCGGATGCTTGCTTATTCTACGGTTGGAACTCCTGATTATATTGCCCCAGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTACGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCAATGTCTACTTGTCGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCCAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAGCAAAGGCTTGGGACCAAGGGTGCAGACGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACGCAATTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTAGGTTATACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCCGGAATAGCTGAATTGAAGAAGAAGAGCGCGAAATCTAAAAGACCTTCCATCAAATCACTCTTTGGTAATTTTTAA 1554 40.41 MEATRCWFNKFRSKDKPKPSTNKESTGNARDPSRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSAKSKRPSIKSLFGNF 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5821826 5829668 + MELO3C023003.2.1 Cme05g00575 327638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00575 517 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 41 515 - -
Cme05g00575 517 MobiDBLite consensus disorder prediction 7 21 - -
Cme05g00575 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Cme05g00575 517 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme05g00575 517 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme05g00575 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 515 - -
Cme05g00575 517 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00575 517 MobiDBLite consensus disorder prediction 1 50 - -
Cme05g00575 517 MobiDBLite consensus disorder prediction 22 50 - -
Cme05g00575 517 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Cme05g00575 517 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Cme05g00575 517 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cme05g00575 517 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00575 517 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00575 517 Coils Coil 68 102 - -
Cme05g00575 517 CDD STKc_NDR_like 117 482 - -
Cme05g00575 517 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Cme05g00575 517 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01680 Cme-Chr1:23029684 Cme05g00575 Cme-Chr5:5821826 0 dispersed
Cme03g02047 Cme-Chr3:27974245 Cme05g00575 Cme-Chr5:5821826 0 dispersed
Cme05g00575 Cme-Chr5:5821826 Cme07g00204 Cme-Chr7:1355858 0 dispersed
Cme07g00201 Cme-Chr7:1335626 Cme05g00575 Cme-Chr5:5821826 3.26E-27 dispersed
Cme11g01288 Cme-Chr11:19640564 Cme05g00575 Cme-Chr5:5821826 5.41E-10 dispersed
Cme05g00575 Cme-Chr5:5821826 Cme02g00269 Cme-Chr2:2258759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64888 PF00069 Pkinase 8.60E-66 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00575 K08790 - csv:101205120 1038.1