Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00582 ATGCCTTTCAAGCGGTATGTTGAGATCGGGAGGATTGCCCTCATCAACTATGGTGAGGATTACGGGAAGCTTGTTGTAATCGTTGATGTAATTGACCAGAACCGGGCTTTGGTCGATGCCCCTGATATGGAGCGTTCTCAAATGAACTTTAAGAGACTCTCCTTGACCGATATCAAAATTGATATTAAGAGGGTCCCGAAGAAGAAGGAACTGATTGAAGCCATGAAAGCTGGGGGTATGGAAGATTCCCAACAATTTCTTACTTATATGGTATTTGCTTAA 282 42.91 MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKIDIKRVPKKKELIEAMKAGGMEDSQQFLTYMVFA 93
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5911383 5912882 - MELO3C023012.2.1 Cme05g00582 327645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00582 93 CDD KOW_RPL14 7 77 IPR041985 -
Cme05g00582 93 PANTHER RIBOSOMAL PROTEIN L14, PUTATIVE-RELATED 1 78 - -
Cme05g00582 93 PANTHER 60S RIBOSOMAL PROTEIN L14 1 78 IPR039660 GO:0003723|GO:0003735
Cme05g00582 93 SUPERFAMILY Translation proteins SH3-like domain 5 79 IPR008991 -
Cme05g00582 93 Gene3D - 1 83 IPR014722 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00582 K02875 RP-L14e, RPL14; large subunit ribosomal protein L14e - csv:101206069 155.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme05g00582 Cme06g00480 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00582 Cme-Chr5:5911383 Cme06g00480 Cme-Chr6:3037003 7.35E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g730 . . . . . Bpe14g01263 . . . . Cma06g01315 . Car06g01130 Car14g01631 . Cpe08g00340 Cpe03g01523 Bhi01g00717 . . . Hepe05g1665 . . Cla06g00677 Cam06g0727 Cec06g0735 Cco06g0744 Clacu06g0719 Cmu06g0703 Cre06g1475 . . Cone7ag0331 Cone4ag0336 Lsi05g01742 Csa02g01049 Chy05g00311 Cme06g00480 . Blo07g00270 Bda11g00638 Bda13g00056 . Bpe13g00551 Bma02g00768 Bma06g01605 Sed02g1415 Cmo06g01323 Cmo14g01859 . . Car08g00948 Car17g00136 Cpe12g00131 Cpe17g00202 Bhi12g01601 Tan06g2396 Cmetu06g1413 . . . Lcy13g0388 Cla05g00436 Cam05g0475 Cec05g0484 Cco05g0484 Clacu05g0472 Cmu05g0450 Cre05g0512 Lsi09g01222 Csa03g01198 Chy06g00462 Cme05g00582
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000981 3 3 2 3 3 2 5 3 3 1 2 4 2 2 2 4 2 4 4 4 2 3 2 2 2 2 3 4 3 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00582 Cme_Chr05 FPKM 1.774047 2.263121 1.672247 1.697157 3.578772 3.694677 3.828178 2.972138 2.787558 2.672339