Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00588 ATGAGCACGCATAGTTGCTCAAAACAATACAGTAGAAGGAGTAAAAAGCAGACGCGGAGCAATTCTGATGATGAAACTGCAGCTCGGACTAGGCCATTCAGCTTTGAAGATATTATGCTTAGAAGGAAGACTAAAGGGTCGTCTGCTACGGTTGAGGTGGATGTCACAAGTACTGATAACAGGGCATCTGAAAGACATTTTCGTCACAGTAAAGGTTCTTCTCTTGATGTGCAAAATGTGTCATTGGAGGAGGAATCAGCCAAAGATAGTTCAAGAAGGAAAAAAGAGGAGACAGTGTTGAAGAACAATATAGTGGTTAGGAATGACAGAAATAATTATGAATCTGGATTGTCACTGATGAGTAAACTTAAACACGACAGGAATGAAAAGGATGAAAGAGAGAAATATGGCCAGGAAAATCTTGGTTGGGGAAAAAATGACCAGAGTTGTAGGATTGATATTGAAACTGAAACTGCAAAGAGGCATTCAAGAGATACAGCTTTCAAGGATAGACGTCAAGATCATGGTAGGGGGGAATTTGAGAGAGAAAGCAAGAGAAAATCTCAAAATGGCGATGATGACAGGAATAGAGACAGTAAGAGAAAATCTCAAAATTGTGTTGATGAAAGCAACAAAGACGGTAGGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGATAGTAAGAGAAAATCTCAAAATGGCGATGATGACAGGAGTAGAGACAGTAAGAGAAAATCTCAAAATGGCGATGATGACAGGAATAGAGACAGTAAGAGAAAATCTCAAAATGGTGATGATGAAAGGAACAGAGACGGTAAGAGGAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAGTAAGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAAGTACATTGCAAAGAGACATGATCATGGTAAACACCATGACCTAGAAAATAGAGAAAAAAAGGAAGCTATAGTATCATTGACTTCACGTTATCAAGATTCTAGATTGAAAAGAACACGGAAAAGAAGCTCAGATCGTGAAAGTAAACATAGAAGATCTGTTTCACTTTCTCCAAGATCACACAAGCACTCAACTAAGTTAGCTAGGCAGAAGGAGTTGCCTTTAGATTCTCATGTGAAGAAGTCTGGAAGATGGCGTTCTGATAGCGAAAGAACAGGAGATTTTACCAACACTTCCAATAGCCAATACCGGCGGCATTCTGGATCAACTAGTGGGCTTGGTGGCTATTCACCTAGAAAGAGAAGAACTGAATCTGCTGTCAAGACTCCTTCACCTCTTCTATCACCAGAGAAGAAAAATGAAGTGTTGGATCTTCCTCCAACAGAAAAGGTTGGATTATTTTCTGGCTCAGTTGCTTCCAACTTCTCGCCGTCAAATCCTACTGTTTCATTGGGCATTAGTAATGATCAATCTGGCGGTGCATTCTTTTCTTCTGCTATGGGGAAATCTTTATCAGTGGTTTCTTCAAATAATATAGCAATGAAGACAAAGGTTTCTTTTGATTTGGTTCAGCTGACCCAAGCTACTCGGCCAATGAGGAGGCTTTATATCGAAAACTTACCACATTCTGCATCTGAGAAAGCAATTATTGATTGCCTGAATGGTTTTCTTATGTCTTCAGGTGTTAATCACATCGAAGGAACCCAGCCATGTATTAGCTGTATTATACACAAAGATAGGGGTCAAGCTCTTGTCGAATTTCTGACACCTGAGGATGCTTCAGCAGCTCTTTCGTTTGATGGAAGTGACTTCTCTGGCTCCATTCTAAAGATTCGGCGACCAAAAGATTATATCGAAACTGTATTCATTGTCCCAGTAGCTGAGGATTCAGATGAAGGTGGTCCTTTACGTCTTTCTTTTTCTGGGACAGGGGAGGGAATTTGTGGTCATCTTTTCCTCCTGGCTCTCAAGAATATCTGGTTAGAAAATATAGGACTTAGGAGAATCTCCATCCTTCCATTTAAGGGAGGGATGGATCTGCAAGTGGATGAGACTGGTGACCTGGACAAGTCGATGCCGGTGGTAAACAAAATAAGTGATGTTGTTGAGGACTCACCGAATAAGTCTACTGAATGGTACTCCCTGATTATCGTTGCTGGGATCTCAAATAGATTATCATCCGAAATGCTTAGGGATATTGTTACTGCATTTGGACGATTGAAGGCCTATCACTTTGAGATGAACGATGATCTTAATCAACCTTGTGCCTTTCTGGAGTACATTGATGAATCAGTCGTGTCCAAAGCTTGTGCTGGTCTGAATGGTATGAAGATTGGAGGGCAAGTGCTAAAAGTGTTTCCTGCTGTTCCTTTTCCATCAACGGAACGTACTGGATGCCAACCATGTTATGGCATCCCAGAGCACGTAAAACCTCTTCTTCAACAGCCTTCGGTAGTGTTAAAAATTAACAATGTGTTTAATGCAGATGTCCTCCCTGTACTCTCTGAGTCAGATATTGATGAAGTTCTTGAAGATATTCGGTTTGGGACAGTTAAATCCATGAATTTTGTAAAGCCATGCAATGGTGGCGTCAATACTGAAGAAGAACACAAGAAAATTAGTGATATCTCTGATGTTGAGATCAAACATGAGATTCAGGAGAACAGCAAGACGGTGATTTTGAGAAACAGTAATGATCTTGAAGATAACAATGCTAACCTTGATAGCTGCCCCAGTGATACCAATCAGAAGCAGGCTAATTGCTCTGGCAATGGTAGGCATCAAGACGAAGCTGTGGAGGACAAATTGTGTCAAATGGGTAATACTGATGCTACATGTTTTGAAGTCGCAGCTTGTGAGAATGCTTCAGAAAGAATCCGTCAAGTACTCTCTGAACAGCGAAGCAGCCCGGAAAATGATTTTCAGAATGCAAAAGTAACCGAAATAATTGAAACTGATGAAACTGGGTTGGATAAGAAATTGGTGTGTGTAGAAGCTTCATCTATGATGGTGGCTGATAATGAGAAGAAATCTCTAAATGGATTGGATCCCGTGGTGAGAATAGCTTCCAATGCTGTTGAGAAAAGCGAAAAGAAGGATCCTGATAATAATCAGGAGAGTTTATTTGTGTTGGGGAGTGTCTTTGTTGAGTTTGGTAGAATAGAAGCCTCATGTATGGCTGCACATTCTTTACATGGTAGAATTTATGATGGACAAGAGATTAGCATCGAGTACATTCCTCATGATCTCTATCGGAAGAGGTGTAAGGATCTACGTCTAGGTTATGGACATGAAAGATTTACGGCTTGGTACCTTCAATCAAATGTAAAGGTTAAGAGCCATAAGAACAGCCTAAGGCCAGGGGACAACCCCTACGCCCACAAACCTAAACCAGAAGAGCACTCCAATTGTTAA 3384 40.6 MSTHSCSKQYSRRSKKQTRSNSDDETAARTRPFSFEDIMLRRKTKGSSATVEVDVTSTDNRASERHFRHSKGSSLDVQNVSLEEESAKDSSRRKKEETVLKNNIVVRNDRNNYESGLSLMSKLKHDRNEKDEREKYGQENLGWGKNDQSCRIDIETETAKRHSRDTAFKDRRQDHGRGEFERESKRKSQNGDDDRNRDSKRKSQNCVDESNKDGRRKSQNGDDDRNRDSKRKSQNGDDDRSRDSKRKSQNGDDDRNRDSKRKSQNGDDERNRDGKRKSQNGDDDRNRDSKRKSQNGDDDRNRDKYIAKRHDHGKHHDLENREKKEAIVSLTSRYQDSRLKRTRKRSSDRESKHRRSVSLSPRSHKHSTKLARQKELPLDSHVKKSGRWRSDSERTGDFTNTSNSQYRRHSGSTSGLGGYSPRKRRTESAVKTPSPLLSPEKKNEVLDLPPTEKVGLFSGSVASNFSPSNPTVSLGISNDQSGGAFFSSAMGKSLSVVSSNNIAMKTKVSFDLVQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLMSSGVNHIEGTQPCISCIIHKDRGQALVEFLTPEDASAALSFDGSDFSGSILKIRRPKDYIETVFIVPVAEDSDEGGPLRLSFSGTGEGICGHLFLLALKNIWLENIGLRRISILPFKGGMDLQVDETGDLDKSMPVVNKISDVVEDSPNKSTEWYSLIIVAGISNRLSSEMLRDIVTAFGRLKAYHFEMNDDLNQPCAFLEYIDESVVSKACAGLNGMKIGGQVLKVFPAVPFPSTERTGCQPCYGIPEHVKPLLQQPSVVLKINNVFNADVLPVLSESDIDEVLEDIRFGTVKSMNFVKPCNGGVNTEEEHKKISDISDVEIKHEIQENSKTVILRNSNDLEDNNANLDSCPSDTNQKQANCSGNGRHQDEAVEDKLCQMGNTDATCFEVAACENASERIRQVLSEQRSSPENDFQNAKVTEIIETDETGLDKKLVCVEASSMMVADNEKKSLNGLDPVVRIASNAVEKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHDLYRKRCKDLRLGYGHERFTAWYLQSNVKVKSHKNSLRPGDNPYAHKPKPEEHSNC 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5986935 5998336 - MELO3C023018.2.1 Cme05g00588 327651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00588 1127 Gene3D - 875 1083 IPR012677 -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 893 915 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 370 394 - -
Cme05g00588 1127 PANTHER RNA-BINDING PROTEIN 246 1077 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 16 43 - -
Cme05g00588 1127 PANTHER RNA-BINDING PROTEIN 1 282 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 109 442 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 1 96 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 150 329 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 82 96 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 58 72 - -
Cme05g00588 1127 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 704 780 IPR000504 GO:0003723
Cme05g00588 1127 MobiDBLite consensus disorder prediction 395 419 - -
Cme05g00588 1127 MobiDBLite consensus disorder prediction 893 917 - -
Cme05g00588 1127 Gene3D - 754 775 IPR012677 -
Cme05g00588 1127 Gene3D - 518 613 IPR012677 -
Cme05g00588 1127 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 523 606 IPR000504 GO:0003723
Cme05g00588 1127 MobiDBLite consensus disorder prediction 1104 1127 - -
Cme05g00588 1127 Gene3D - 702 753 IPR012677 -
Cme05g00588 1127 SUPERFAMILY RNA-binding domain, RBD 509 606 IPR035979 GO:0003676
Cme05g00588 1127 SUPERFAMILY RNA-binding domain, RBD 706 853 IPR035979 GO:0003676
Cme05g00588 1127 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 246 1077 - -
Cme05g00588 1127 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 282 - -
Cme05g00588 1127 SUPERFAMILY RNA-binding domain, RBD 1033 1077 IPR035979 GO:0003676
Cme05g00588 1127 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 706 774 IPR000504 GO:0003723
Cme05g00588 1127 MobiDBLite consensus disorder prediction 120 140 - -
Cme05g00588 1127 SMART rrm1_1 705 776 IPR000504 GO:0003723
Cme05g00588 1127 SMART rrm1_1 524 602 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00588 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - csv:101213128 1075.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00850 Cme-Chr3:15935312 Cme05g00588 Cme-Chr5:5986935 5.95E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00588 Cme_Chr05 FPKM 3.438751 4.159961 4.533728 4.080832 5.321999 6.348075 5.94478 8.596456 7.242438 6.915224