Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00604 ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACTTCTGAGGATAAGCTAAAGGACTACTTCAGCAACTATGGTGAAGTTATGCATACGGTCGTTATGAGGGATAAGATCACTAGCAGACCCAGAGGGTTTGGCTTTGTTGTCTTTTCAGATCCCTCTGTTCTCGATCGAGTTCTTCAGGATAAGCACACTATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACTCCTGCCAGAGCAAGCAATTCCAATGGTAGAAACTCTGGCGGCAGTGGTGGTGGAAACATGAGAACCAAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTGACTGAAGAAGGATTTAAAGAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGTTTTATATCTTTTGATTCTGAAGAAGCTGTTGACAGAGTTTTGCACAAGACGTTTCACGATTTGAATGGTAAACAAGTAGAAGTTAAGCGTGCCCTTCCCAAGGATGCCAATCCAGGTGCAGGTGGCCGTTCAATGGGTGGTGGTGCTGGTAGTGGTGGTTATCAAGGTTATGGGTCATCTGGTGGTGTCAATTCAAATTCTTATGATAATCGTATGGATTCCAATAGGTACATGCAATCACAGGGCTCTAGTGGAGGTTTCCCACCTTATGGTTCCTCTGGATACAGTAATCCTGCGTATGGTTATGGTTCATCGAATAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCAAATACTGGGTTTGGTGCCCCTGCAGCAGTAGCCTATGGCAACCCAAATGTTGCCAATGCTGGTTATGGGAGCGGTCCTCAAGGTGGACCTAGAAATTCATGGTCAGGTCAAGCTCCCTCTGGGTATGGAGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCTGGCGGCAATGCTGGGGCTGGGAGTGGAGGACCTGGATCTGCACCCACAGGTCATTCTCCTGGTGGAGCTGCTGCTGGGTATGGCAATCAGGGTTATGGATATGGTGGGTTTGGTAATCAAGGTTATGGTTATGGTGGAGGTGATGGCTCGTACGGTAGTCAATCTGGTTATGGTACAACTGGAGGACGAACTGGTAGTGCATCAAATAGCAATGTTGGAGGTGGAAGTGGGGGAGAATTACAGGGGAACAATGCTTACATGGGTAATGGCTATGGGGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGGGGACAAGTAGGTTATACAGGTGGTTATGCCGGTGGACAAGCTCGACAAGCCCAACAACAGTAA 1386 47.11 MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKIFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDSEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGRSMGGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGSSGYSNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPAAVAYGNPNVANAGYGSGPQGGPRNSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRTGSASNSNVGGGSGGELQGNNAYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6246317 6249802 - MELO3C023033.2.1 Cme05g00604 327667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00604 461 MobiDBLite consensus disorder prediction 74 111 - -
Cme05g00604 461 SUPERFAMILY RNA-binding domain, RBD 3 107 IPR035979 GO:0003676
Cme05g00604 461 CDD RRM2_DAZAP1 109 188 IPR034131 GO:0003723
Cme05g00604 461 MobiDBLite consensus disorder prediction 188 240 - -
Cme05g00604 461 SUPERFAMILY RNA-binding domain, RBD 110 217 IPR035979 GO:0003676
Cme05g00604 461 MobiDBLite consensus disorder prediction 389 420 - -
Cme05g00604 461 Gene3D - 106 227 IPR012677 -
Cme05g00604 461 Gene3D - 4 88 IPR012677 -
Cme05g00604 461 MobiDBLite consensus disorder prediction 389 410 - -
Cme05g00604 461 MobiDBLite consensus disorder prediction 86 106 - -
Cme05g00604 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Cme05g00604 461 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 459 - -
Cme05g00604 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Cme05g00604 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 171 IPR000504 GO:0003723
Cme05g00604 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Cme05g00604 461 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cme05g00604 461 MobiDBLite consensus disorder prediction 212 240 - -
Cme05g00604 461 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 459 - -
Cme05g00604 461 SMART rrm1_1 7 78 IPR000504 GO:0003723
Cme05g00604 461 SMART rrm1_1 112 184 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00604 K14411 MSI; RNA-binding protein Musashi - csv:101207768 579.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02836 Cme-Chr1:35279740 Cme05g00604 Cme-Chr5:6246317 7.99E-12 dispersed
Cme05g00604 Cme-Chr5:6246317 Cme06g02800 Cme-Chr6:35213739 5.91E-84 dispersed
Cme04g01839 Cme-Chr4:26129036 Cme05g00604 Cme-Chr5:6246317 6.02E-44 transposed
Cme04g00962 Cme-Chr4:12961637 Cme05g00604 Cme-Chr5:6246317 3.29E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g762 Blo01g00299 Blo12g00140 Bda03g01091 . Bpe04g00987 . Bma04g01016 Bma05g01250 Cmo08g01037 Cmo17g00147 . . . . . . . . . . . . . . Cla06g00688 Cam06g0739 Cec06g0746 Cco06g0757 Clacu06g0730 Cmu06g0714 Cre06g1489 . . Cone7ag0342 Cone4ag0355 . Csa02g01037 Chy05g00300 . . . . . Bpe05g01104 . . . Sed09g0643 . . Cma08g01068 Cma17g00148 Car08g00943 Car17g00130 Cpe12g00125 Cpe17g00209 Bhi12g01574 Tan06g2380 Cmetu05g0543 Lac12g2130 Hepe03g0304 . Lcy13g0400 . . . . . . . Lsi09g01204 . . Cme05g00604
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001187 1 2 4 4 3 1 4 1 3 2 1 2 4 2 2 4 2 6 3 1 2 2 2 2 2 2 2 4 4 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00604 Cme_Chr05 FPKM 12.383534 15.007856 19.577431 18.509228 21.129459 16.798569 20.835817 30.449905 30.096916 31.970457