Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00623 CATGTTGACTTGAACAGAGCAGGAGTGCCATTGCTTGAGATTGTTTATGAACCTGACATAAGAAAGGCTGCGGAGTATGTTGCAGAATTACAGAGGTTGGTTAGATATTTGGGTGTAAGTAATGGAAACATGCAAGAAGGTTCTATATGGTGTGATGTGAATGTCTCGGTCCGTCCTATTGGGCAGTCACAACTTGGAACAAAGGTAGAGATAAAAAACTTGAACTCATTTTCATCGGTGAGCAGAGCAATTGATTTTGAAATTTCAAGACAAGTGCTTCTCCATAGTCAAGGCCAAAGTGATCAAATTGTACAGGAAACCAGACTCTGGGAAGAAGGCGCCCAGAAAACAATTACAATGAGGAAAAAGGAAGGACTTTCTGATTATCGATATTTTCCAGAGCCTGATCTCCCAGAAGTCATCCTCACAAAAGAATATGTTGATAATATTCATGATTCTTTGCCCGAACTTCCAGAAATGAAACGTAGAAAATATATGAGTATGGGCCTGAGCATGCAGGATGTACTTTTCCTGGCAAATGACATTAGTGTGGCTGAGTTTTTTGATGCAACTATTGCAAGAGGGGACGAAATGAAGCTGGCTGCTAATTGGATAATGGGTGATATTGCTGCCTACATGAAAAGTGAGAAGTTGACTATAAACGACATAAAGCTCACACTCTTCAAGAGCTTGCTAAATTGA 702 40.17 HVDLNRAGVPLLEIVYEPDIRKAAEYVAELQRLVRYLGVSNGNMQEGSIWCDVNVSVRPIGQSQLGTKVEIKNLNSFSSVSRAIDFEISRQVLLHSQGQSDQIVQETRLWEEGAQKTITMRKKEGLSDYRYFPEPDLPEVILTKEYVDNIHDSLPELPEMKRRKYMSMGLSMQDVLFLANDISVAEFFDATIARGDEMKLAANWIMGDIAAYMKSEKLTINDIKLTLFKSLLN 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6478891 6481743 - MELO3C023047.2.1 Cme05g00623 327686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00623 233 Pfam GatB/GatE catalytic domain 2 147 IPR006075 GO:0016874
Cme05g00623 233 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B, MITOCHONDRIAL 2 226 - -
Cme05g00623 233 PANTHER GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED 2 226 IPR017959 GO:0016884
Cme05g00623 233 SUPERFAMILY GatB/YqeY motif 156 226 IPR003789 GO:0016884
Cme05g00623 233 SUPERFAMILY Glutamine synthetase/guanido kinase 2 155 IPR014746 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00623 K02434 gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] - csv:101209226 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00590 Cme-Chr5:6026539 Cme05g00623 Cme-Chr5:6478891 3.44E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g797 . Blo12g00135 . . Bpe04g00980 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0187 . . . . . Chy05g00285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g00623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007728 1 2 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00623 Cme_Chr05 FPKM 7.918009 9.300801 3.733639 3.887378 12.388371 11.63599 13.034151 9.789686 9.319552 9.6454