Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00627 ATGAAGGGAAATGAAAGTGAAGCGAAGAAGAAAAAGCAGAAGACTGCTGCAGCTTCTAATTCAGGCGTAGATCTGAAGTCCATCATCCATAACCATGCATTGTTCTTTGACAAGTTAGTGGAGCTTATCCCCGTGAGATTCTATTTATCTAGTGATGAAAAAGGAAAACCTTGGTTTCAGGGCCTTAGCAAGAAAGAAAAGGCCATGGCTAAGAAGGAATCAAAGAAAAACCTTAAGAAAGCACGAAGAGATCGTATGGATCCAGAGAAGTCTTCTAAATCAACTGTTGATTTGCTTAAAGAAAGCTTGGAAAATGAAAAGTTGGAAAGTAAAAATGACGATGATGGAGATGATGTTAAGCCGGTGGCATCTGGGTGGGACAGTGATGACCAGTCAGTGACATATGAAGAACTGAGACAACGCCTTCATCGAAAAATTGAAGAGTTCCGGCTGAATAGAAATACAGGATGTTCAAATAGGGAAAAGAAGAGAAATGAAAGAAACGAGAGAAGGGAAGCTATCCATAAGAAACGCAAGAGAGAAAATGACACCAACGAGAAGAAATCAGTCACTACTCCCTCAAAAGTCGAAATGGAGAGGAATGTAGTTGAGGCCTCCAAAGAACTTGCGTTTGGTCATGTTAAACTAGGAACCGAAGAAGAGCAAGGTAAGAATAAGAAGAGAAAACTCTCCAAGTTGAAGGAACTTGAAAAGGCAAAAAAGTTGGAAGAAGCAAAGAAAGACCCCGGAAAGGGCGAGATAATATTGAAGAAGCATTCTTGGCAGGCAGCAACAAGTAGAGCTGCTGGGGTTAAAGTTCATGATGATCCACAGCGTCTGATGAAGAGTTTGCGGAAGGAAAAGAAACAACAGCTGAAGAGTGTTGAGAAATGGAAAGGCAGAATTGAAACCACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGATCCGAAAACATAGCTCAGAAAATCCATGACAAGAAGATGAAACGGATTGAAAAGAGGGAGAAAAAATTAATGCGCCCCGGCTTCGAAGGTCGCAAGGAAGGTTTCATTAATGAAAGCAGCGCATAA 1074 41.06 MKGNESEAKKKKQKTAAASNSGVDLKSIIHNHALFFDKLVELIPVRFYLSSDEKGKPWFQGLSKKEKAMAKKESKKNLKKARRDRMDPEKSSKSTVDLLKESLENEKLESKNDDDGDDVKPVASGWDSDDQSVTYEELRQRLHRKIEEFRLNRNTGCSNREKKRNERNERREAIHKKRKRENDTNEKKSVTTPSKVEMERNVVEASKELAFGHVKLGTEEEQGKNKKRKLSKLKELEKAKKLEEAKKDPGKGEIILKKHSWQAATSRAAGVKVHDDPQRLMKSLRKEKKQQLKSVEKWKGRIETTQKMKAERQQKRSENIAQKIHDKKMKRIEKREKKLMRPGFEGRKEGFINESSA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6501377 6503142 - MELO3C023050.2.1 Cme05g00627 327690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00627 357 MobiDBLite consensus disorder prediction 58 73 - -
Cme05g00627 357 Coils Coil 226 246 - -
Cme05g00627 357 MobiDBLite consensus disorder prediction 300 323 - -
Cme05g00627 357 Coils Coil 64 84 - -
Cme05g00627 357 PANTHER BNAC02G02430D PROTEIN 9 354 - -
Cme05g00627 357 MobiDBLite consensus disorder prediction 1 23 - -
Cme05g00627 357 MobiDBLite consensus disorder prediction 153 200 - -
Cme05g00627 357 Pfam 60S ribosome biogenesis protein Rrp14 29 89 IPR029188 -
Cme05g00627 357 PANTHER SURFEIT LOCUS PROTEIN 6 9 354 IPR007019 -
Cme05g00627 357 MobiDBLite consensus disorder prediction 80 124 - -
Cme05g00627 357 Coils Coil 281 301 - -
Cme05g00627 357 Pfam Surfeit locus protein 6 159 331 IPR029190 -
Cme05g00627 357 MobiDBLite consensus disorder prediction 55 133 - -
Cme05g00627 357 MobiDBLite consensus disorder prediction 336 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00627 - - - csv:101209715 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02080 Cme-Chr2:26703240 Cme05g00627 Cme-Chr5:6501377 4.32E-162 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g802 Blo01g00305 . . Bda08g00009 Bpe04g00978 . Bma04g01025 Bma05g01260 . Cmo17g00131 . . . . . . . . . . . . . . Cla06g00706 Cam06g0756 Cec06g0762 Cco06g0774 Clacu06g0747 Cmu06g0730 Cre06g1507 Cone14ag0191 Cone15ag0201 . . . Csa02g01018 Chy05g00282 . . . . . Bpe05g01114 . . . . . . . Cma17g00129 . Car17g00115 Cpe12g00113 . . . . . . . . . . . . . . . Lsi09g01186 . . Cme05g00627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002685 1 3 0 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 2 2 2 1 7 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00627 Cme_Chr05 FPKM 9.421133 5.445716 6.151068 11.521871 2.064696 1.21954 1.30353 30.512121 28.548418 25.209593